Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00127 ATGGACTCCCATTCTCTTCCACATCCTTTCCACAGCAGAGATTTCCATCTTCTCCAACAGCAACATGAATTTCTTCAACTTCAACAACAGCAAAGTTCAGATCATGACCAGCAAAGGGGTGGCGGCGGACTGAACCAGACCAAAAAACGAGATCGCGACGAAAATAGCGATAATGGAGGAGATGACAGCAAAGACCTCGCAGGAGAGGGATCAGAAATGTCTAGACGACCCCGAGGAAGACCGTCCGGATCCAAAAACAAACCCAAACCTCCTATCATCATTACTAGAGACAGCGCTAACGCTCTACGCACCCATGTTGTAGAAGTCGCTGACGGATGTGACATCATCGAGAGTGTTTCCGCCTTTGCTCGCCGGAGACAGAGGGGGGTCTGTATTATGAGCGGCGCCGGAACGGTGATGAACGTCACGATCCGGCAGCCGGCTTCGCCTGGTGCTGTCGTCACTTTACACGGCCAGTTTGAGATCTTATCATTATCCGGCTCGTTTCTACCGCCTCCAGCGCCCCCGGCAGCCACTGGGTTGACCATATATTTGGCCGGAGGGCAAGGGCAAGTGGTCGGAGGGAGTGTCGTCGGGAAACTCGTTGCTTCCGGTCCCGTTGTAATTATGGCCGCTTCGTTTAGCAACGCTGCCTACGAGAGGCTTCCCCTTGACGACTATGAAGAGCCCCCGCCGTTGCCTATCCAAGGAAGCTCAATTGGATCACCTGGTGCAGTTAATCAGACACCTCAAGCTCCGCCATTATTGGCGGATGGGAATCAGCCGCCTTTATTTCATGGGATGCCTCCGAATCTTCTAAACTCCATTCAATTACCATCTGAAGCTTACTGGGCAAGTGGTCGACCTCCCTAG 873 52.81 MDSHSLPHPFHSRDFHLLQQQHEFLQLQQQQSSDHDQQRGGGGLNQTKKRDRDENSDNGGDDSKDLAGEGSEMSRRPRGRPSGSKNKPKPPIIITRDSANALRTHVVEVADGCDIIESVSAFARRRQRGVCIMSGAGTVMNVTIRQPASPGAVVTLHGQFEILSLSGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGKLVASGPVVIMAASFSNAAYERLPLDDYEEPPPLPIQGSSIGSPGAVNQTPQAPPLLADGNQPPLFHGMPPNLLNSIQLPSEAYWASGRPP 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1877282 1878154 + Bma007002.1 Bma12g00127 91553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00127 290 MobiDBLite consensus disorder prediction 45 79 - -
Bma12g00127 290 CDD DUF296 103 186 IPR005175 -
Bma12g00127 290 MobiDBLite consensus disorder prediction 19 44 - -
Bma12g00127 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 290 IPR014476 GO:0003680
Bma12g00127 290 MobiDBLite consensus disorder prediction 240 255 - -
Bma12g00127 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 290 - -
Bma12g00127 290 MobiDBLite consensus disorder prediction 228 270 - -
Bma12g00127 290 MobiDBLite consensus disorder prediction 1 92 - -
Bma12g00127 290 MobiDBLite consensus disorder prediction 1 18 - -
Bma12g00127 290 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 216 IPR005175 -
Bma12g00127 290 Gene3D - 102 229 - -
Bma12g00127 290 ProSiteProfiles PPC domain profile profile. 99 236 IPR005175 -
Bma12g00127 290 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 229 - -
Bma12g00127 290 PIRSF ESCAROLA 16 290 IPR014476 GO:0003680
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00788 Bma12g00127 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00570 Bma-Chr14:6137009 Bma12g00127 Bma-Chr12:1877282 9.72E-14 dispersed
Bma12g00127 Bma-Chr12:1877282 Bma12g00129 Bma-Chr12:1890793 1.20E-104 proximal
Bma12g00127 Bma-Chr12:1877282 Bma05g00788 Bma-Chr5:44846922 3.59E-154 wgd
Bma12g00127 Bma-Chr12:1877282 Bma07g01622 Bma-Chr7:51775117 2.53E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00127 - - vvi:100265031 346.28