Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00140 ATGCAGCCCAGAGGTAGTGGTGGAAGGGACCCATTTTTTGACTCTGGCGAACCTTTTGCTGGATTCGGGGGATTTGGTGGCTTTGGTGGTCATCAGAGCTTAATGTCTAATTTCTTCGGGGGAAAGGATCCATTTGATGATCCTTTCTTCGCTCGACCTTTGGGAGGCATGTTGCAGTCAAACATTTTTGGTGCTACTGGAAGTCCTTTTGCACAACCTTTTGGACATCCTTTTGGACAACCTTTTGGACATCCTTTTGGACAACCTTCTGGTTTTCTTGAGCATCAAGGGCCGGTAGCTCAGGGATCAACCAGGCCAATAATTGAGGAGTTGAACTCTGATGATGAAAATGAAGAGCTAGGTAAAGACAAGGAAGAAAATTCCAGAAAGCATGGAAGGTCAAGTGACAAACCTTATGTTGAGTATCCAGAAGAGGATGTTCAGGATGAGCTAGCTGGTTTTGAAAATGCTTGGAAAGTAAACGGCGGAAATCATTTGGCCGGGTGGAGGGAGAGCGGCAATGGTCACCGCGGTAACAATGGCACTCGGCAAGGTCAGATTAGGCCAGGTGGGTGGGCTCTACCTTCCCCTCAGCAATCAGAGAGCACAGAAAGGCTTCTAATGGACAACAGAGACGGACGACAATGGGCTTCGAAGGTTGCGAGAAATCTGAAAATGGCGGTAGCGCGAACTACGTCGATTGTTTTTCTTGGAATTTTCCGTCCTCGGCAGAACAATTTGTTATCGCCTTTCCGTTTGTGTCCAACTGTTTCGAACAACTCCGTGGTAACGTTTCGGTTCGTGGCTCGAGGAATTTGTTTCAGCCGGATTCAGTGCGCCGGGTCGTATTCCGGAGACGATGGAAAAAAGGTTTCAGCTCGGCTTTCGCAGGTCCAGCAGCTATTGAAGGAGGCTGAGGAGCGAGCTTTCTGTTCGGACAACGGGCCCGTCCCTAGAATTACCATCGACCATGTAACAGTGAGTTTTGCCAGAAGTGGAGGTCCAGGTGGTCAGAATGTCAATAAAGTGAACACAAAGGTGGACATGCGGTTCAATGTCAAAAATGCTTATTGGCTAAGTGACAGGATTAGAGAGAAAATTATGCAAATGGAGAAAAATCGCATTAATAAAGATGGGGAGCTTGTGATTTCTTCTACAAAAACTAGAACACAGAAAGGCAACATCGAAGATGCACTTGAAAAACTTCAGGCAATCATTGATGCTGCTTCATATGTTCCACCACCTCCTTCAGAAGAGCAAAAGAAGAAAATAGAGAAGATGGCTGCTATTGGGGAACAAAAACGCCTCAAAAGCAAGAAGGAACTTTCAAACAAAAAAGCATTTCGAAGAAGTCGAGAAAGTTGGGATTGA 1371 46.1 MQPRGSGGRDPFFDSGEPFAGFGGFGGFGGHQSLMSNFFGGKDPFDDPFFARPLGGMLQSNIFGATGSPFAQPFGHPFGQPFGHPFGQPSGFLEHQGPVAQGSTRPIIEELNSDDENEELGKDKEENSRKHGRSSDKPYVEYPEEDVQDELAGFENAWKVNGGNHLAGWRESGNGHRGNNGTRQGQIRPGGWALPSPQQSESTERLLMDNRDGRQWASKVARNLKMAVARTTSIVFLGIFRPRQNNLLSPFRLCPTVSNNSVVTFRFVARGICFSRIQCAGSYSGDDGKKVSARLSQVQQLLKEAEERAFCSDNGPVPRITIDHVTVSFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSDRIREKIMQMEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIEKMAAIGEQKRLKSKKELSNKKAFRRSRESWD 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2008399 2014277 + Bma007017.2 Bma12g00140 91566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00140 456 MobiDBLite consensus disorder prediction 167 203 - -
Bma12g00140 456 Pfam RF-1 domain 320 447 IPR000352 GO:0003747|GO:0006415
Bma12g00140 456 MobiDBLite consensus disorder prediction 431 456 - -
Bma12g00140 456 MobiDBLite consensus disorder prediction 110 142 - -
Bma12g00140 456 MobiDBLite consensus disorder prediction 122 142 - -
Bma12g00140 456 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 331 347 IPR000352 GO:0003747|GO:0006415
Bma12g00140 456 PANTHER CLASS I PEPTIDE CHAIN RELEASE FACTOR 226 456 - -
Bma12g00140 456 SUPERFAMILY Peptidyl-tRNA hydrolase domain-like 319 410 - -
Bma12g00140 456 Coils Coil 288 308 - -
Bma12g00140 456 Gene3D - 318 454 - -
Bma12g00140 456 PANTHER CLASS I PEPTIDE CHAIN RELEASE FACTOR 226 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00140 K15033 ICT1, MRPL58; peptidyl-tRNA hydrolase ICT1 [EC:3.1.1.29] - jre:108984800 326.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00781 Bma12g00140 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00140 Bma-Chr12:2008399 Bma12g00144 Bma-Chr12:2066911 5.29E-164 dispersed
Bma12g00140 Bma-Chr12:2008399 Bma12g00141 Bma-Chr12:2024730 1.18E-165 tandem
Bma12g00140 Bma-Chr12:2008399 Bma05g00781 Bma-Chr5:44747404 1.61E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g479 Blo02g01062 Blo03g00178 Bda06g00051 Bda08g00558 Bpe05g00600 . . . Cmo06g00775 Cmo16g01088 . . . . . Cpe14g00860 . . . . . . . . . . . . . . . Cone8ag0364 Cone12ag0355 Cone6ag0714 Cone9ag0714 Lsi07g01347 . . Cme06g02634 . . . . . . Bma05g00781 Bma12g00140 . . . Cma06g00752 Cma16g01040 Car06g00673 Car16g00991 Cpe08g00767 . . . . . . . . . . . . . . . . Csa03g00322 Chy06g02002 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011191 1 0 0 5 1 0 1 1 1 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 3 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00140 Bma_Chr12 FPKM 0.0 0.0 0.0 0.0 0.165849 0.201941 0.0 0.0 0.0 0.0