Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00143 AGGTACCGTTTGAGATCTAAGTTGGAGATTGATGATGTGGGACGAGACTACTTTTGCTGGCAACGATATGGAAAGAACTTGGGCAAGAAAGCTTCAGCTGCTGAAGAACCTGAAGCTGCAAGTGTTGGCTGGGGAGCTGGTGCTGATAGTACAGCCATGGCTGCTTCTCATGGGGAAGAACTTGGATGGCAATGGGCAATGCCTCTGGAATATAATCTTGCAGGGCTGAATGCAATAAGCTTTGACAAAGGGTGTTATGTAGGCCAAGAGCTCATAGCTCGGACGCATCATTGGGGGGTGATTCGCAAGCGCATACTGCCTTTACGCTTTCTTAATGATAGAGGAGAAGTTGTGGAACAGAAAGTGAGTCCCGGATCGGAAGTGATCGGGTTTGCCTCTGGAAAGAAAGCTGGCTCAGTGACCACTGCACTCGGATGCTGTGGATTGGGTCTATTACGATTAGAAGTCGCATTTAATCGATCGAGAGAATTAAGAATACAAGGATTAGAGGATGTGAAAATTGAAGCTATTAGACCAGATTGGTGGCCTCATCACTGGCTTCTAGATGATCACCAAAGCAGTGCAGCTGCATAG 594 47.14 RYRLRSKLEIDDVGRDYFCWQRYGKNLGKKASAAEEPEAASVGWGAGADSTAMAASHGEELGWQWAMPLEYNLAGLNAISFDKGCYVGQELIARTHHWGVIRKRILPLRFLNDRGEVVEQKVSPGSEVIGFASGKKAGSVTTALGCCGLGLLRLEVAFNRSRELRIQGLEDVKIEAIRPDWWPHHWLLDDHQSSAAA 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2063106 2064513 + Bma007021.1 Bma12g00143 91569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00143 197 PANTHER UNCHARACTERIZED 59 184 IPR045179 -
Bma12g00143 197 PANTHER UNCHARACTERIZED 1 66 IPR045179 -
Bma12g00143 197 TIGRFAM ygfZ_signature: folate-binding protein YgfZ 59 109 IPR017703 -
Bma12g00143 197 Gene3D - 63 172 - -
Bma12g00143 197 SUPERFAMILY Folate-binding domain 1 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00143 K22073 IBA57; transferase CAF17, mitochondrial [EC:2.1.-.-] - qsu:111989320 244.202
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00143 Bma-Chr12:2063106 Bma12g00145 Bma-Chr12:2072887 6.69E-18 proximal
Bma12g00143 Bma-Chr12:2063106 Bma12g00175 Bma-Chr12:2384975 5.95E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g482 . Blo03g00177 Bda06g00050 . . Bpe07g00149 . . . Cmo16g01090 . . . . . Cpe14g00862 . . . . . . . . Cla10g00297 Cam10g0311 Cec10g0321 Cco10g0314 Clacu10g0308 Cmu10g1147 Cre10g0557 . . Cone6ag0710 Cone9ag0712 . . . . . . . . . . . Bma12g00143 . . . . Cma16g01042 . Car16g00993 . . . . . . . . . . . . . . . . . . Chy06g02004 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009813 1 0 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00143 Bma_Chr12 FPKM 3.583744 2.106057 5.421038 3.695392 33.738747 37.961128 35.587494 28.181049 27.215603 25.870804