Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00154 ATGGGTTTTCGCGATTACCCATTTGTGGATCGGAGCGAGGAGAGAGATAGAGATTGCAGAAGGTATCCGGGACATAGAGAGGTTTTGATGTATTTGAAAGATTTCTCGAGGGATTTCGGAATTTGTGAATTGGTTAGGTTCGAGACGGAGGTGGTGTTTGTTTCTCGAGAAAATGGCGGAAAATGGAAAGTCAGGTCGAGAAACAGAGGAGTCGAGGTCAGCGTCGATGAGATTTACGATGCTGTGGTGATTTGCAATGGCCATTACACTGAGCCTCGAATTGCTCCAATTTCGGGAATCTCTGCTTGGCCTGGAAAGCAGATGCATAGCCACAATTATCGTCTTCCAGAGCCGTTTCGAGATCAAGTCGTGGTTTTGATAGGGAATGCGGCAAGTGCGGTCGACATTTCGCAGGACATCGCACGAGTTGCCAAAGAAGTCCATGTTTCGTCTCGGTCGGCTCCCGAAGCTTTCTTACCCATTGTCAATATGCATTTACTTATGACCTGCAGTCTGCAGATCGAGAGTGTCCACAAGGATGGTAGTGTCGAGTTTGAAGACGGGACCATCATCGTCGTTAATGTCATTTTGCACTGCACCGGGTACAAATACCATTTTCCGTTTCTAGAAAGCAATGGCATCGTGAATGTCGACGACAATCGTGTGGGGCCGCTATACAAGCACGTTTTCCCCCCGGCTTTGGCTCCATTTCTCTCCTTTGTTGGATTACCATGGAAGGTTGTTCCTTTTCCTTTGTTCGAATTCCAAAGCCAGTGGATTGCTCGAGTTTTGTCTAATCGAGTATTGCTCCCTTCGCCGGAGACGATGATGGATGACGTTGAAACGTTTTATGCGATGCTCGATGCTTCTTCCACTCCGAAACGATACACTCATAACATGTCTGCCTATCAGTTTGAGTACAACGATTGGGTGGCCGAGCAATGCAGGAGCCCGGCCACAGAAGAATGGAGGAGGAAGATGTACTTGGATGCGTCGAAGAACAGGATGGCTAGACCCATCACCTATCGGGATGAGTGGGATGACCAAGATTTGATTGCGGAAGCGAATCTTGATTTCGAGAATTGCATTACTAAAGCCAATCTGGCCTAG 1110 47.75 MGFRDYPFVDRSEERDRDCRRYPGHREVLMYLKDFSRDFGICELVRFETEVVFVSRENGGKWKVRSRNRGVEVSVDEIYDAVVICNGHYTEPRIAPISGISAWPGKQMHSHNYRLPEPFRDQVVVLIGNAASAVDISQDIARVAKEVHVSSRSAPEAFLPIVNMHLLMTCSLQIESVHKDGSVEFEDGTIIVVNVILHCTGYKYHFPFLESNGIVNVDDNRVGPLYKHVFPPALAPFLSFVGLPWKVVPFPLFEFQSQWIARVLSNRVLLPSPETMMDDVETFYAMLDASSTPKRYTHNMSAYQFEYNDWVAEQCRSPATEEWRRKMYLDASKNRMARPITYRDEWDDQDLIAEANLDFENCITKANLA 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2186705 2188696 - Bma007035.1 Bma12g00154 91580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00154 369 PRINTS Flavin-containing monooxygenase (FMO) signature 186 213 IPR000960 GO:0050660|GO:0050661
Bma12g00154 369 PRINTS Flavin-containing monooxygenase (FMO) signature 79 95 IPR000960 GO:0050660|GO:0050661
Bma12g00154 369 PRINTS Flavin-containing monooxygenase (FMO) signature 135 150 IPR000960 GO:0050660|GO:0050661
Bma12g00154 369 PRINTS Flavin-containing monooxygenase (FMO) signature 251 264 IPR000960 GO:0050660|GO:0050661
Bma12g00154 369 PRINTS Flavin-containing monooxygenase (FMO) signature 45 57 IPR000960 GO:0050660|GO:0050661
Bma12g00154 369 PANTHER DIMETHYLANILINE MONOOXYGENASE 1 361 - -
Bma12g00154 369 Gene3D - 96 199 IPR036188 -
Bma12g00154 369 Pfam Flavin-binding monooxygenase-like 3 153 IPR020946 GO:0004499|GO:0050660|GO:0050661
Bma12g00154 369 Pfam Flavin-binding monooxygenase-like 179 283 IPR020946 GO:0004499|GO:0050660|GO:0050661
Bma12g00154 369 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 1 361 - -
Bma12g00154 369 Gene3D - 1 345 IPR036188 -
Bma12g00154 369 SUPERFAMILY FAD/NAD(P)-binding domain 173 350 IPR036188 -
Bma12g00154 369 SUPERFAMILY FAD/NAD(P)-binding domain 1 159 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00154 - - - mdm:103437131 501.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00842 Bma-Chr3:8052058 Bma12g00154 Bma-Chr12:2186705 1.07E-19 dispersed
Bma12g00154 Bma-Chr12:2186705 Bma15g00716 Bma-Chr15:13178979 7.00E-08 dispersed
Bma12g00154 Bma-Chr12:2186705 Bma11g00514 Bma-Chr11:6380400 9.04E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g505 . . . . . Bpe07g00163 . . . Cmo16g01109 . . . . . Cpe14g00878 . . . . . . . . . . . . . . . . . . . . . . Cme06g02609 . . . . . . . Bma12g00154 . . . . Cma16g01059 Car06g00685 . . . . . . . . . . . . . . . . . . . Chy06g02022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00154 Bma_Chr12 FPKM 20.589342 20.423275 19.228765 19.77883 40.075886 37.979393 37.31612 31.642271 30.254929 28.269304