Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00164 ATGTCGGCTTGTAAAGATGAAGATCCTCGCGTCTATGGCATCAAAAGTAATATTCGCGTCGTTCCCGATTTCCCCAAACCAGGAATCATGTTTCAAGACATTACCACTCTGCTCCTTGAACCGAAAGCATTCAAAGACACGATCAATATGTTCGTCGAGCGATACAAAGACAAAAACATTTCAGTCGTTGCAGGAATAGAAGCTCGAGGTTTTATATTTGGTCCGCCAATTGCATTGGCTATTGGTGCAAAGTTCGTTCCATTGAGGAAACCGAAGAAGTTGCCTGGGGAAGTTATTTTCGAGGAGTACGAGCTCGAATATGGAAAAGACTGTCTCGAGATGCATGTCGGAGCGGTTGAGGCCGGTGAAAGGGCTTTGGTGGTCGATGATTTAATTGCAACTGGCGGAACTCTATGTGCTGCCATGAATTTGCTCGAACGGGCTGGAGCAGAAGTAGCTGAATGCGCTTGCATTATCGAATTGCCGGAATTAAAGGGTCGGGAAAGGCTGAACGGAAAGCCGCTGTTTGTGCTGGTGGAGTACCATTGA 549 46.63 MSACKDEDPRVYGIKSNIRVVPDFPKPGIMFQDITTLLLEPKAFKDTINMFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGEVIFEEYELEYGKDCLEMHVGAVEAGERALVVDDLIATGGTLCAAMNLLERAGAEVAECACIIELPELKGRERLNGKPLFVLVEYH 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2272158 2275212 - Bma007046.1 Bma12g00164 91590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00164 182 CDD PRTases_typeI 48 180 IPR000836 -
Bma12g00164 182 Pfam Phosphoribosyl transferase domain 46 168 IPR000836 -
Bma12g00164 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 2 181 - -
Bma12g00164 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 2 181 - -
Bma12g00164 182 SUPERFAMILY PRTase-like 11 175 IPR029057 -
Bma12g00164 182 TIGRFAM apt: adenine phosphoribosyltransferase 14 181 IPR005764 GO:0003999|GO:0005737|GO:0006168
Bma12g00164 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999|GO:0005737|GO:0006168
Bma12g00164 182 Gene3D - 2 182 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00164 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - vvi:100264315 332.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01273 Bma-Chr1:17224863 Bma12g00164 Bma-Chr12:2272158 3.25E-66 transposed
Bma05g00056 Bma-Chr5:2385148 Bma12g00164 Bma-Chr12:2272158 8.88E-89 transposed
Bma05g00068 Bma-Chr5:2533446 Bma12g00164 Bma-Chr12:2272158 1.91E-92 transposed
Bma12g00164 Bma-Chr12:2272158 Bma05g00772 Bma-Chr5:44590722 3.87E-91 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00164 . 30 180 PRT Gene Family AT1G80050 74.8 1.5e-62 235.7
Bma05g00056 . 3 152 PRT Gene Family AT1G80050 70.0 1.2e-56 216.1
Bma05g00068 . 36 212 PRT Gene Family AT1G80050 58.8 1.2e-51 199.5
Bma01g01273 . 33 158 PRT Gene Family AT1G80050 57.7 1.6e-43 172.6
Bma05g00772 . 30 147 PRT Gene Family AT1G80050 59.6 3.0e-42 168.3
Bma12g00164 . 8 145 PRT Gene Family AT5G11160 74.6 2.7e-54 208.4
Bma05g00772 . 8 132 PRT Gene Family AT5G11160 72.8 2.2e-48 188.7
Bma05g00068 . 14 178 PRT Gene Family AT5G11160 59.4 6.5e-48 187.2
Bma05g00056 . 1 118 PRT Gene Family AT5G11160 74.6 6.0e-46 180.6
Bma01g01273 . 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bma12g00164 . 7 180 PRT Gene Family AT1G27450 75.9 5.7e-74 273.9
Bma05g00068 . 13 215 PRT Gene Family AT1G27450 70.4 1.7e-73 272.3
Bma05g00056 . 1 155 PRT Gene Family AT1G27450 82.6 5.6e-69 257.3
Bma05g00772 . 7 132 PRT Gene Family AT1G27450 77.0 1.1e-53 206.5
Bma01g01273 . 11 153 PRT Gene Family AT1G27450 54.9 7.8e-47 183.7
Bma05g00406 . 89 575 PRT Gene Family AT2G16570 84.9 4.7e-244 840.5
Bma05g00409 . 1 306 PRT Gene Family AT2G16570 83.5 5.6e-144 508.1
Bma05g00406 . 91 575 PRT Gene Family AT4G34740 85.6 1.0e-243 839.3
Bma05g00409 . 1 302 PRT Gene Family AT4G34740 82.0 5.0e-145 511.5
Bma05g00406 . 86 548 PRT Gene Family AT4G38880 74.2 1.7e-195 679.1
Bma05g00409 . 1 289 PRT Gene Family AT4G38880 75.9 1.5e-122 436.8
Bma12g00164 . 7 180 PRT Gene Family AT1G27450 75.9 5.7e-74 273.9
Bma05g00068 . 13 215 PRT Gene Family AT1G27450 70.4 1.7e-73 272.3
Bma05g00056 . 1 155 PRT Gene Family AT1G27450 82.6 5.6e-69 257.3
Bma05g00772 . 7 132 PRT Gene Family AT1G27450 77.0 1.1e-53 206.5
Bma01g01273 . 11 153 PRT Gene Family AT1G27450 54.9 7.8e-47 183.7
Bma12g00164 . 30 180 PRT Gene Family AT1G80050 74.8 1.5e-62 235.7
Bma05g00056 . 3 152 PRT Gene Family AT1G80050 70.0 1.2e-56 216.1
Bma05g00068 . 36 212 PRT Gene Family AT1G80050 58.8 1.2e-51 199.5
Bma01g01273 . 33 158 PRT Gene Family AT1G80050 57.7 1.6e-43 172.6
Bma05g00772 . 30 147 PRT Gene Family AT1G80050 59.6 3.0e-42 168.3
Bma12g00164 . 5 97 PRT Gene Family AT4G22570 84.9 1.8e-43 171.8
Bma05g00772 . 5 97 PRT Gene Family AT4G22570 82.8 7.4e-42 166.4
Bma12g00164 . 1 96 PRT Gene Family AT4G12440 83.3 9.8e-41 162.5
Bma05g00772 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bma12g00164 . 8 145 PRT Gene Family AT5G11160 74.6 2.7e-54 208.4
Bma05g00772 . 8 132 PRT Gene Family AT5G11160 72.8 2.2e-48 188.7
Bma05g00068 . 14 178 PRT Gene Family AT5G11160 59.4 6.5e-48 187.2
Bma05g00056 . 1 118 PRT Gene Family AT5G11160 74.6 6.0e-46 180.6
Bma01g01273 . 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bma01g01441 . 3 188 PRT Gene Family AT1G71750 61.4 2.9e-63 238.4
Bma14g00666 . 16 470 PRT Gene Family AT1G55810 83.3 1.3e-220 762.3
Bma07g01237 . 16 459 PRT Gene Family AT1G55810 82.0 5.9e-213 736.9
Bma14g00666 . 67 475 PRT Gene Family AT3G27440 75.3 4.2e-181 630.9
Bma07g01237 . 67 459 PRT Gene Family AT3G27440 74.6 1.5e-173 605.9
Bma14g00666 . 3 469 PRT Gene Family AT3G27190 73.9 1.8e-204 708.8
Bma07g01237 . 3 459 PRT Gene Family AT3G27190 73.8 4.2e-201 697.6
Bma14g00666 . 1 470 PRT Gene Family AT4G26510 83.3 3.2e-230 794.3
Bma07g01237 . 1 459 PRT Gene Family AT4G26510 82.8 2.9e-223 771.2
Bma14g00666 . 3 472 PRT Gene Family AT5G40870 73.7 8.3e-205 709.9
Bma07g01237 . 3 459 PRT Gene Family AT5G40870 73.1 3.1e-199 691.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00164 Bma_Chr12 FPKM 86.747383 98.405113 22.720053 26.011293 22.085367 19.650076 22.11969 67.713524 66.244751 66.828629