Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00167 ATGGCCTCTAAATCCAAGCTTTTTCTGGTTTTTGTTGTCCTGAAGCTCACCCTTTCTCTGCAAATTTCCAATGTAGAAGATGACCCATCTGACTGCAACAACCGTCGGATCTACTACAGACAGCTCCCGGATCGCTTCAACCTCGATCTCCTCACCAACTGCTCCGAATACCACCTCTTCGAAGACTTCTGCCCTTACTTAGCCAATCATGGCCTCGGGCTAAAGACGCACAACGGATCTCACAGCTGGTATCGGACCGATCGTTCAATGCTCGAGGTGATTTTCCACCGCCGAATCCTCGAATACCCATGTCTGACGACCGATCCGAACGCTGCCGACGGAGTTTATCTCCCGTACTATGCCGGAATCGACGCTCTCAGGTACCTCTACGGCCCGGAAGTGAACTCCAGCGCCGATCACGGCCTTGATTTATTCGAATTTCTGCAAGAAGATGAACCCGATTTGTGGAAACGTAATCTGGGTCACGATCATTTCTTGGTTATGGCTAGACCGGCGTGGGATTTCTCGCAGCCGTTGCAGAATGATCCGCCGATTTGGGGGACTTCGTTTTTGGAGCTGCCGGAATTTTTCAATGTCACTGCGCTGACGTTCGAGGGCAGAGCTTGGCCGTGGCAGGAGAACGCTATTCCCCATCCGACTTCGTTCCATCCGTCTAATCTCGCTTTAATGGAGTCCTGGATCCGCCGCGTACGGCGTTCCAAACGCTCCACTCTGATGCTGTTCGCCGGCGGTGTTAGCTTCTCCTCCACCCCCAACATTCGGCGGAGCATTAGGCTAGAATGCGATAACGCCACCTCCGACGACAAAACCGGCAACGCTGAAAACGGCGGGCATTCCACGGAGTGCGAGATTGTGGATTGCTCGAACGGGATTTGTGAGCACGATCCAATTCGATATATGAAGCCGATGCTGGGATCGAGCTTTTGTTTGCAGCCGCCCGGAGATACACCGACACGGCGTTCAACGTTCGATGGAATTCTGGCCGGTTGCATTCCCGTATTCTTTGAGGACTTATCGGCGAAGTCGCAGTACAGATGGCACTTGCCGGAGGAAGAATACGAGGAATTCTCGGTTTCCATTGCCAAAGAAGACGTAGTATTTAAAGGGTTGAAGATTTTGGATGTTCTGAAGAAAATTCCTAGAGCGAGAGTGGAGAAAATGAGGGAAAATTTGCTGGAGCTGATTCCCAGAATAATTTACAGAAAGCATGGGAGTTCTTTGGGGTTGAAGACGAAGAAGGACGCTTTTGATATTGCCATAGAAGGTACTTTGCAGAAGATCAAAGCCAAGGTTGCAGAGCTCCATTAA 1329 50.79 MASKSKLFLVFVVLKLTLSLQISNVEDDPSDCNNRRIYYRQLPDRFNLDLLTNCSEYHLFEDFCPYLANHGLGLKTHNGSHSWYRTDRSMLEVIFHRRILEYPCLTTDPNAADGVYLPYYAGIDALRYLYGPEVNSSADHGLDLFEFLQEDEPDLWKRNLGHDHFLVMARPAWDFSQPLQNDPPIWGTSFLELPEFFNVTALTFEGRAWPWQENAIPHPTSFHPSNLALMESWIRRVRRSKRSTLMLFAGGVSFSSTPNIRRSIRLECDNATSDDKTGNAENGGHSTECEIVDCSNGICEHDPIRYMKPMLGSSFCLQPPGDTPTRRSTFDGILAGCIPVFFEDLSAKSQYRWHLPEEEYEEFSVSIAKEDVVFKGLKILDVLKKIPRARVEKMRENLLELIPRIIYRKHGSSLGLKTKKDAFDIAIEGTLQKIKAKVAELH 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2295864 2297192 - Bma007049.1 Bma12g00167 91593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00167 442 Pfam Exostosin family 32 380 IPR040911 -
Bma12g00167 442 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 21 437 IPR004263 GO:0006486|GO:0016757
Bma12g00167 442 PANTHER XYLOGLUCAN GALACTOSYLTRANSFERASE GT19-RELATED 21 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00167 - - - mcha:111021403 695.656
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00816 Bma12g00167 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00167 Bma-Chr12:2295864 Bma04g01232 Bma-Chr4:35881048 3.35E-13 dispersed
Bma10g00390 Bma-Chr10:3835501 Bma12g00167 Bma-Chr12:2295864 1.70E-83 transposed
Bma14g00508 Bma-Chr14:5679985 Bma12g00167 Bma-Chr12:2295864 1.78E-86 transposed
Bma12g00152 Bma-Chr12:2174848 Bma12g00167 Bma-Chr12:2295864 0 wgd
Bma12g00167 Bma-Chr12:2295864 Bma05g00774 Bma-Chr5:44614731 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g332 . . . Bda08g00363 . . . . . . Cma02g01017 Cma15g01389 Car02g00762 Car15g01252 . . Cpe05g00704 . . . . . . . . . . . . . . . . Cone6ag0771 . . . . . . . . . . . Bma05g00816 Bma12g00167 . . Cmo15g01454 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009812 1 0 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00167 Bma_Chr12 FPKM 194.139191 204.428802 47.738945 47.811852 67.823738 56.516552 63.524456 28.573891 26.363182 29.327845