Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00169 ATGTCATCTTCGCCGACTCCTCCCTTTTCTCCCGCTCTGGACCACCTTCCCCTCTCCGAGCAGCTATGTTATGTCCACTGCAATATTTGTGACACCGGCCTTGCGGTGAGTGTTCCTTGCACTAGTTTCTTCAAGACTGTGACAGTCCGATGCGGCCATTGCACTAACCTTTTGCCTCTGACTATGAGAGCTTTGCTTTTTCCTGCAACTAATCCTCAGTTTCATCAGCTGAATCACCCTTTCTTCTCTCCTTCTCTCAATCTTCTGGAAGAGGTCCAGAATCCGTCACCCAACTTTATGGTCAGCCAAACTAGTGCAAATCCGTACCACTTTCCGCCTCAAGTATCTGATGAGGTTTCAAGAGCTCCTGTAATTAACAAACCTCCAGAGAAGAGACAAAGAGTTCCCTCTGCATATAACAGGTTCATCAAAGACGAGATTCAACGCATTAAATCAGTGAATCCCGATATATCACACAGAGAAGCTTTCAGCGCAGCAGCTAAGAACTGGGCCCACTTTCCCCATATTCAGTTCGGTCTCATACCTGATCAAACTCTGAAGACGAAGACAAACATGCGACAGGTAATTATGTCAAACACTTTTAAAACCCATCTCAATTACATTAAAAACCACCTCAAAGAACAATTATGA 651 44.85 MSSSPTPPFSPALDHLPLSEQLCYVHCNICDTGLAVSVPCTSFFKTVTVRCGHCTNLLPLTMRALLFPATNPQFHQLNHPFFSPSLNLLEEVQNPSPNFMVSQTSANPYHFPPQVSDEVSRAPVINKPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIQFGLIPDQTLKTKTNMRQVIMSNTFKTHLNYIKNHLKEQL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2310453 2311992 - Bma007051.1 Bma12g00169 91595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00169 216 Pfam YABBY protein 19 180 IPR006780 GO:0007275
Bma12g00169 216 SUPERFAMILY HMG-box 124 174 IPR036910 -
Bma12g00169 216 PANTHER PROTEIN YABBY 6-RELATED 15 195 IPR006780 GO:0007275
Bma12g00169 216 Gene3D High mobility group box domain 125 203 IPR036910 -
Bma12g00169 216 PANTHER AXIAL REGULATOR YABBY 3 15 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01225 Bma-Chr5:51670462 Bma12g00169 Bma-Chr12:2310453 3.76E-62 dispersed
Bma06g00744 Bma-Chr6:38621157 Bma12g00169 Bma-Chr12:2310453 3.56E-42 dispersed
Bma11g00817 Bma-Chr11:25431353 Bma12g00169 Bma-Chr12:2310453 5.92E-49 dispersed
Bma12g00169 Bma-Chr12:2310453 Bma14g00033 Bma-Chr14:456429 3.34E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58088 PF04690 YABBY 4.40E-67 CL0114 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00169 K25796 - zju:107403723 289.271