Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00169 ATGTCATCTTCGCCGACTCCTCCCTTTTCTCCCGCTCTGGACCACCTTCCCCTCTCCGAGCAGCTATGTTATGTCCACTGCAATATTTGTGACACCGGCCTTGCGGTGAGTGTTCCTTGCACTAGTTTCTTCAAGACTGTGACAGTCCGATGCGGCCATTGCACTAACCTTTTGCCTCTGACTATGAGAGCTTTGCTTTTTCCTGCAACTAATCCTCAGTTTCATCAGCTGAATCACCCTTTCTTCTCTCCTTCTCTCAATCTTCTGGAAGAGGTCCAGAATCCGTCACCCAACTTTATGGTCAGCCAAACTAGTGCAAATCCGTACCACTTTCCGCCTCAAGTATCTGATGAGGTTTCAAGAGCTCCTGTAATTAACAAACCTCCAGAGAAGAGACAAAGAGTTCCCTCTGCATATAACAGGTTCATCAAAGACGAGATTCAACGCATTAAATCAGTGAATCCCGATATATCACACAGAGAAGCTTTCAGCGCAGCAGCTAAGAACTGGGCCCACTTTCCCCATATTCAGTTCGGTCTCATACCTGATCAAACTCTGAAGACGAAGACAAACATGCGACAGGTAATTATGTCAAACACTTTTAAAACCCATCTCAATTACATTAAAAACCACCTCAAAGAACAATTATGA 651 44.85 MSSSPTPPFSPALDHLPLSEQLCYVHCNICDTGLAVSVPCTSFFKTVTVRCGHCTNLLPLTMRALLFPATNPQFHQLNHPFFSPSLNLLEEVQNPSPNFMVSQTSANPYHFPPQVSDEVSRAPVINKPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIQFGLIPDQTLKTKTNMRQVIMSNTFKTHLNYIKNHLKEQL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2310453 2311992 - Bma007051.1 Bma12g00169 91595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00169 216 Pfam YABBY protein 19 180 IPR006780 GO:0007275
Bma12g00169 216 SUPERFAMILY HMG-box 124 174 IPR036910 -
Bma12g00169 216 PANTHER PROTEIN YABBY 6-RELATED 15 195 IPR006780 GO:0007275
Bma12g00169 216 Gene3D High mobility group box domain 125 203 IPR036910 -
Bma12g00169 216 PANTHER AXIAL REGULATOR YABBY 3 15 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00169 K25796 YAB; plant-specific transcription factor YABBY family protein - zju:107403723 289.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01225 Bma-Chr5:51670462 Bma12g00169 Bma-Chr12:2310453 3.76E-62 dispersed
Bma06g00744 Bma-Chr6:38621157 Bma12g00169 Bma-Chr12:2310453 3.56E-42 dispersed
Bma11g00817 Bma-Chr11:25431353 Bma12g00169 Bma-Chr12:2310453 5.92E-49 dispersed
Bma12g00169 Bma-Chr12:2310453 Bma14g00033 Bma-Chr14:456429 3.34E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00744 CCT,ECH 1 162 C2C2-YABBY Transcription Factor Family AT1G69180 56.7 5.5e-45 177.6
Bma14g00033 . 62 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 2.9e-40 161.8
Bma07g00218 . 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 62.7 7.6e-58 220.3
Bma11g00256 . 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 57.8 1.2e-55 213.0
Bma14g00033 . 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 56.3 9.0e-43 170.2
Bma12g00169 . 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 3.8e-41 164.9
Bma01g00320 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.5e-40 162.2
Bma11g00817 . 11 172 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 4.2e-40 161.4
Bma14g00033 . 29 211 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 1.2e-46 183.3
Bma12g00169 . 29 194 C2C2-YABBY Transcription Factor Family AT4G00180 50.5 5.2e-39 157.9
Bma01g00320 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.4 9.7e-65 243.0
Bma11g00817 . 7 173 C2C2-YABBY Transcription Factor Family AT2G26580 66.5 4.4e-57 217.6
Bma06g00968 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 66.5 2.7e-54 208.4
Bma11g00256 . 1 164 C2C2-YABBY Transcription Factor Family AT2G26580 59.1 8.3e-48 186.8
Bma07g00218 . 6 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.3 6.6e-45 177.2
Bma14g00033 . 19 177 C2C2-YABBY Transcription Factor Family AT2G26580 55.3 4.4e-41 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58088 PF04690 YABBY 4.40E-67 CL0114 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00169 Bma_Chr12 FPKM 1.20805 2.908977 0.0 0.568302 1.53152 2.385807 2.642408 0.608907 0.425482 0.26583