Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00188 ATGGAGGTTAGAGAAAGTGGGGTTACGGTGGTTAGATCAGATGCTCCGTCGGAGTACCAAATAGCTCCGAGAGCGGAAAACTCAGTCTCTGTTGGTAATCCCACACCGCCGGCGACGGAGCTGGGGAAGAAGAAAAGGGGCCGGCCGAGGAAGTACTTACCAGACGGTTCTCTCAACCCGGCTGTGTCACCCAAGCCGATATCCTCTTCCGTCACTCCGCCGGTGATCGATTTCTCGGCAGCGAAGCGAGGAAAAGTCCGAGCGGCGAGCTCTGTGAGCAAAACTAAGTACGAAATGGAGAATATAGGTAGTGAATGGGTGGCGTGTTCAGCCGGAGCTAACTTCACGCCACATATTATTACAGTCAACTCCGGCGAGGACGTCACTACGAAAATTCTCTCGTTTTCTCAACACGGGCCTCGGACCGTATGTGTTCTATCTGCAAATGGCGTGATCTCCAGCGTAACGCTCCGCCAGCCTGATTCCTCCGGCGGTACATTGACATACGAGGGTCGGTTTGAAATATTGTCCTTATCGGGATCTTTCACGCCTAACGATACCGGAGGGACGCAAAGCAGGACGGGAGGAATGAGTGTCTCTTTAGCCAGTCCCGATGGACGAGTTGTCGGTGGTGGCATAGCCGGTTTACTAGTGGCTGCAAGTCCCATACAGGTTGTGGTAGGCAGTTTTCTATCAGGAAACCAACATGAGCAGAAACCCAAGAAGCAAAAACAGGACTTCAATTCAACTTCGCCGCCGGCTGCAGCTCTTCCAGTTTCCAGCGAAAATCCGAAGCCAAATTTCTCGAGTTCCCCGCCTTTCCGAGGCGATAATTGGCCATTACCTCCACCGGATTCAAGAAGCAAGCCAACTGATATCAATATATCTTTACCATGA 897 51.95 MEVRESGVTVVRSDAPSEYQIAPRAENSVSVGNPTPPATELGKKKRGRPRKYLPDGSLNPAVSPKPISSSVTPPVIDFSAAKRGKVRAASSVSKTKYEMENIGSEWVACSAGANFTPHIITVNSGEDVTTKILSFSQHGPRTVCVLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFTPNDTGGTQSRTGGMSVSLASPDGRVVGGGIAGLLVAASPIQVVVGSFLSGNQHEQKPKKQKQDFNSTSPPAAALPVSSENPKPNFSSSPPFRGDNWPLPPPDSRSKPTDINISLP 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2557149 2559109 - Bma007073.1 Bma12g00188 91614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00188 298 ProSiteProfiles PPC domain profile profile. 112 253 IPR005175 -
Bma12g00188 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 6 298 IPR039605 GO:0003680
Bma12g00188 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 6 298 - -
Bma12g00188 298 Gene3D - 117 248 - -
Bma12g00188 298 MobiDBLite consensus disorder prediction 1 69 - -
Bma12g00188 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 230 IPR005175 -
Bma12g00188 298 MobiDBLite consensus disorder prediction 245 274 - -
Bma12g00188 298 MobiDBLite consensus disorder prediction 234 298 - -
Bma12g00188 298 MobiDBLite consensus disorder prediction 180 199 - -
Bma12g00188 298 CDD DUF296 116 230 IPR005175 -
Bma12g00188 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00817 Bma12g00188 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00567 Bma-Chr4:5132139 Bma12g00188 Bma-Chr12:2557149 3.32E-72 dispersed
Bma12g00188 Bma-Chr12:2557149 Bma14g00567 Bma-Chr14:6073947 1.61E-138 dispersed
Bma12g00188 Bma-Chr12:2557149 Bma01g01969 Bma-Chr1:73398310 9.09E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00188 - - mdm:103405981 415.231