Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00189 ATGGGTCGCAAACAAAACGAGCTGGAATCATCCCGTTCCACTTACCTGATCTTGATTTTCGTGGGTTTTATTTCCTTTTCGGCGGTCTACACTTTTCTTCCTTTGGTTATCGGATTGGGCGGCGGGTCGACGGCGGCGAAGGAGTCCGAGACCTTATCAATGGTCGGAGAATACAATAATGGCGGCTTAAATGGATGGTGTTGCAGAGGAATCGAAAATTTGGAGTTATGGGGCGCTACTGTAAAATGGGGTTCTGATTTCAAGTTCAATTCTTCCGAGCAGTGTTGTGAGGCTTGCAAGGCGATGTGCAGTGGCAATGATGGGCCTTGTTTGTGCGATACTTGGGTGTTTTGCGGTAATCGCAAGGCTTGTGGTTCGAAATTCGGCGAATGCTGGTTGAAGAAACAGAAGGACGTTTTGGCCCCCGTTCGAGTGGAAGCAGGGCCAAAAGTTATCTGGACTTCTGGGATTATCTATGGTTTTTATGTGTTTCCTCTCGGGATTTTGTTATTTCGTTTTCGTGTTCTTCGATTTTCAGATAGTTTTTTTGTCTCTCCTTCCTTCCAGGGGATTGTCGGGTTGGAGACAGAATTCGGCACTCTTCACATAAAACTTTTACCCGATTGCGCTCCTCATTCGGTAGAATACGTACTCGAGTTGCTGAAACTACGACATTGTGCTGGTTGCCAATTCTATCGCGCTGAAACACGAGGCCAATCATGGGATTCAGAAGGAAATCACATAGAAAATGCTCCATTCGGCCCTCCTTATGCTCTTCTTCAAGGAACTCTAGAAGTCGAAGGCAACTTGTTTAAGAAGATTCCCGTCGAATCACGGCCGTTCATAAAACGCGGGTCTGTGGCATGGATCAATTCAGGGCCAGAATTTTTCATAAGCCTAGCGGATCACATCGAGTGGAAAGACGCTTTTACAGTGTTTGGTTCCGTTTTTCCTGAAGACATGGGAATCGCCGAGAAAATTTCCAGGCTTCCGACCAAATCCGATGTCTGGAATAATGTCAATGTGACAGTATTGGAGAAACCCATCTCGTTTCGACTGAGAAGAATTGAGAGGATTGGTGGCGATGCCAACATGAAATCGGATTGA 1107 46.16 MGRKQNELESSRSTYLILIFVGFISFSAVYTFLPLVIGLGGGSTAAKESETLSMVGEYNNGGLNGWCCRGIENLELWGATVKWGSDFKFNSSEQCCEACKAMCSGNDGPCLCDTWVFCGNRKACGSKFGECWLKKQKDVLAPVRVEAGPKVIWTSGIIYGFYVFPLGILLFRFRVLRFSDSFFVSPSFQGIVGLETEFGTLHIKLLPDCAPHSVEYVLELLKLRHCAGCQFYRAETRGQSWDSEGNHIENAPFGPPYALLQGTLEVEGNLFKKIPVESRPFIKRGSVAWINSGPEFFISLADHIEWKDAFTVFGSVFPEDMGIAEKISRLPTKSDVWNNVNVTVLEKPISFRLRRIERIGGDANMKSD 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2566258 2568532 - Bma007074.1 Bma12g00189 91615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00189 368 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 192 342 IPR002130 GO:0000413|GO:0003755
Bma12g00189 368 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASES 187 357 - -
Bma12g00189 368 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASES 1 160 - -
Bma12g00189 368 Gene3D Hepatocyte Growth Factor 72 163 - -
Bma12g00189 368 PANTHER EXPRESSED PROTEIN 187 357 - -
Bma12g00189 368 PANTHER EXPRESSED PROTEIN 1 160 - -
Bma12g00189 368 Gene3D - 185 349 IPR029000 -
Bma12g00189 368 SUPERFAMILY Cyclophilin-like 185 345 IPR029000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00189 - - - pop:18096759 487.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00189 Bma-Chr12:2566258 Bma12g00193 Bma-Chr12:2609556 0 proximal
Bma05g01303 Bma-Chr5:52327383 Bma12g00189 Bma-Chr12:2566258 1.23E-140 transposed
Bma12g00189 Bma-Chr12:2566258 Bma05g00736 Bma-Chr5:43367888 3.13E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g548 . Blo03g00135 Bda06g01307 . Bpe05g00546 Bpe07g00199 . . Cmo06g00844 . . . . . Sed07g0533 . . Bhi11g00085 Tan01g2109 Cmetu06g1674 . Hepe06g1082 Mch10g1601 . Cla10g00208 Cam10g0216 Cec10g0221 Cco10g0221 . . Cre10g0470 . . Cone6ag0632 . Lsi07g01250 . . Cme06g02522 . . . . . . . Bma12g00189 . . . Cma06g00821 . . . . . . . . . . . . . . . . . . . . Csa03g00225 Chy06g02096 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002040 1 3 2 3 3 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 3 2 3 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00189 Bma_Chr12 FPKM 28.789146 31.333275 27.266775 26.151073 24.385206 21.082531 20.29384 59.983379 60.579578 59.577682