Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00195 TCTTTATTTGCGTTTCCTTCTATTTCAAATTCGCTGGTTATAAGAATTTTTCGCCAGTTGTGCTGTCCGAAGTTGCTGCTTATCCATTTTCGCTTCTTCATCCTCCTTTCACTTCCTATTGTCTACTTCTTAATTTCTACCTCTCGCCGCTCCTCCGTCCAAAATTTATTTGTCGTACTTTCATTCTCTGTTGCGCTTTTACTTTCTCTGAATCTTACCCTTTCTCGCCTACCCTCTATTCGTCTATTTATAGCTCGCTCCTTCCCTATCAATCTTTTCAGATCTTCTTCCTCCTCAAAGCCTCCCCAGCCTGTGTTTTGGTCGATTGGGTCAAAACCCAAATTGGAAAGAAAGCAAAATTCAGGATCCTGGGTTCAAGTATACAGTAACGGGGACGTTTATGAGGGCGAAGTTCACAAAGGGAAAAGCTCAGGAAGCGGGGTTTATCACTATCACATGAGTGGAAGATATGAGGGCGATTGGATTGACCAGAAATACGATGGCTACGGCGTGGAGACGTGGGCGAAGGGAAGCCGGTATAGAGGACAGTACCGGAAAGGATTGAGACATGGGATTGGAGTTTACAGGTTTTTCACCGGCGATGTGTATGCAGGGGCGTGGTCTAATGGGCAGTGTCATGGGTGTGGAGTTCATACTTGTGAGGATGGGAGCAAGTATGCTGGGGAGTTTAAGTATGGCCTTAAACATGGTCTTGGCCACTACCATTTCAGTCCCATGTGCTATCTAAAGATTTTGAAAATTATAATAAGTTTATATAATGTTGAATATTGCAGAAATGGTGACAAATATGCGGGAGAATATTTCGCGGACAAGATGCATGGTTTTGGAGTGTATCGATTCGCAAATGGACATAGGTACGAGGGAGCTTGGCATGAAGGAAGAAGGCAGGGGCTTGGAATGTACACTTTCAGAAATGGAGAAACTAAATCTGGTCATTGGGAAAATGGTGTAGTCAATGTTCCAAGCGTCCAAAATGCCCAACCCGGATCTCCTTTTGCCGTCAACGATACGAAGATTCTTATTGTGATCCAGCAGGAAGCACGAAGGGCCGCGCAGAAAGCACACGATGTGTGTCGGGTGGATGAGTTGGTGAACAAAGCAATTGCAACAGCCAACAGAGCAGCAAATGCAGCAAGAGTAGCAGCTATTAAGGCTGTCCAAAATCAAATGCATCGGATCGACACTGTCGAAGACAAACCAATTCTTCTCGTATGA 1236 44.74 SLFAFPSISNSLVIRIFRQLCCPKLLLIHFRFFILLSLPIVYFLISTSRRSSVQNLFVVLSFSVALLLSLNLTLSRLPSIRLFIARSFPINLFRSSSSSKPPQPVFWSIGSKPKLERKQNSGSWVQVYSNGDVYEGEVHKGKSSGSGVYHYHMSGRYEGDWIDQKYDGYGVETWAKGSRYRGQYRKGLRHGIGVYRFFTGDVYAGAWSNGQCHGCGVHTCEDGSKYAGEFKYGLKHGLGHYHFSPMCYLKILKIIISLYNVEYCRNGDKYAGEYFADKMHGFGVYRFANGHRYEGAWHEGRRQGLGMYTFRNGETKSGHWENGVVNVPSVQNAQPGSPFAVNDTKILIVIQQEARRAAQKAHDVCRVDELVNKAIATANRAANAARVAAIKAVQNQMHRIDTVEDKPILLV 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2621134 2624232 + Bma007081.1 Bma12g00195 91621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00195 411 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 262 325 - -
Bma12g00195 411 PANTHER - 5 243 - -
Bma12g00195 411 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 264 401 - -
Bma12g00195 411 Pfam MORN repeat 180 202 IPR003409 -
Bma12g00195 411 Pfam MORN repeat 226 244 IPR003409 -
Bma12g00195 411 Pfam MORN repeat 134 152 IPR003409 -
Bma12g00195 411 Pfam MORN repeat 203 224 IPR003409 -
Bma12g00195 411 Pfam MORN repeat 293 314 IPR003409 -
Bma12g00195 411 Pfam MORN repeat 157 179 IPR003409 -
Bma12g00195 411 Pfam MORN repeat 270 292 IPR003409 -
Bma12g00195 411 Gene3D - 261 344 - -
Bma12g00195 411 Gene3D - 115 163 - -
Bma12g00195 411 Gene3D - 164 208 - -
Bma12g00195 411 Gene3D - 209 246 - -
Bma12g00195 411 SMART morn 155 176 IPR003409 -
Bma12g00195 411 SMART morn 132 153 IPR003409 -
Bma12g00195 411 SMART morn 178 199 IPR003409 -
Bma12g00195 411 SMART morn 224 245 IPR003409 -
Bma12g00195 411 SMART morn 268 289 IPR003409 -
Bma12g00195 411 SMART morn 201 222 IPR003409 -
Bma12g00195 411 SMART morn 291 312 IPR003409 -
Bma12g00195 411 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 5 243 - -
Bma12g00195 411 PANTHER - 264 401 - -
Bma12g00195 411 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 128 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00195 - - - zju:107430419 549.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01307 Bma-Chr5:52342190 Bma12g00195 Bma-Chr12:2621134 1.64E-162 dispersed
Bma05g01381 Bma-Chr5:53245735 Bma12g00195 Bma-Chr12:2621134 3.31E-103 dispersed
Bma12g00195 Bma-Chr12:2621134 Bma01g02639 Bma-Chr1:83905584 3.04E-11 dispersed
Bma12g00195 Bma-Chr12:2621134 Bma04g01158 Bma-Chr4:29774148 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010482 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00195 Bma_Chr12 FPKM 22.64596 24.718832 18.92314 19.973835 24.914719 24.764101 26.098114 20.97764 19.431923 19.393621