Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00215 ATGGGGAAAGGCAAACGAGATGCCCAAACCAAAGCTACTGTCGAAGATGCAGCCGTTTCTGCTTCTCCCAGCGTCTTCAAAACCATATTTGGCGACGTCGCGGAAGGGAACGCTGGAGTCTCCATTTTTTCCGACGGTAATCCCTTTCGTAGAAAACTCAAGGGGTCTGAAAGTGCTGTTAATATCACCGCGAGCCCTGATGTCGGAGAAGTGAAGAAGAGGAAGAGAGATAAAGAAAGCAAACTATCGAAAAAAGGGGCAATCATAACCAAGCAAATCAATGATTCCGTAGACAGTGTACATGCATACATTGTTTTCAAAACAGAGCAGTCGGCACATGCTTCTTTGTCACATAACATGGCTGTGTTTGCAGGAAATCATATCCGTGTAGACCGGGCATGCCCACCTCGAAAGAAGCTGAAAAGTGAGAATGCTCCAATATATGATCACAAAAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTGAAGGATGAAGAATTGTATCAACTGTTTTGTGGAATCAACACTGTTGGATCCAGCACTGAAGCCGTCCGAGTAATTAGAGATCCTCATACAAATATCGGAAAGGGCTTTGCATACGTTTTATTTAAAACAAGGCAAGCAGCCAGTATGATTGCTAAAAGGCGGAACTTAAAGTTAAGAGAGCGGGAGCTGAGGCTCTTTCAGGCCAAGCCTAACTTGACTCCATCCAAGAGACCGAAGGAATCAGTTTCACCGGATGATGCTTCCCCAGCAAAGTTAGCCAGGATAGACAGCGGCAGGGTTGAAAAGACAAAAACACCCTTGTCTTATCAGGGATTGCGAGCCAGCAAATCTGGTGTTCAAAAAAAGATTAGCATGAAAAAGGCGGTGCCTGAGAAGTTAAAGCCAAAGTCAAAGCGAGAGAAGCCGGTGCCCGTGGTGCAGAAGGGGAAAAGACCAGCCGTTGCAGCCAGGAAGGCCAAAGCAAATGCAATGAAGGAAGGCCCTGTGTTGAACTCAAAACCAAGTGAGATGAAGCGGAAATTAGACAGCCGAACGCCAGAGAGTTCTCGACCCAACAAGAAAGTGAAGAAATTTAGGTAA 1089 45.64 MGKGKRDAQTKATVEDAAVSASPSVFKTIFGDVAEGNAGVSIFSDGNPFRRKLKGSESAVNITASPDVGEVKKRKRDKESKLSKKGAIITKQINDSVDSVHAYIVFKTEQSAHASLSHNMAVFAGNHIRVDRACPPRKKLKSENAPIYDHKRTVFVGNLPFDVKDEELYQLFCGINTVGSSTEAVRVIRDPHTNIGKGFAYVLFKTRQAASMIAKRRNLKLRERELRLFQAKPNLTPSKRPKESVSPDDASPAKLARIDSGRVEKTKTPLSYQGLRASKSGVQKKISMKKAVPEKLKPKSKREKPVPVVQKGKRPAVAARKAKANAMKEGPVLNSKPSEMKRKLDSRTPESSRPNKKVKKFR 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2841157 2844408 + Bma007103.1 Bma12g00215 91641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00215 362 PANTHER RNA-BINDING PROTEIN 34 60 361 - -
Bma12g00215 362 SUPERFAMILY RNA-binding domain, RBD 147 241 IPR035979 GO:0003676
Bma12g00215 362 MobiDBLite consensus disorder prediction 335 356 - -
Bma12g00215 362 MobiDBLite consensus disorder prediction 230 362 - -
Bma12g00215 362 Gene3D - 56 135 IPR012677 -
Bma12g00215 362 CDD RRM2_RBM34 153 229 IPR034221 -
Bma12g00215 362 Gene3D - 141 251 IPR012677 -
Bma12g00215 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 233 IPR000504 GO:0003723
Bma12g00215 362 MobiDBLite consensus disorder prediction 288 309 - -
Bma12g00215 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 225 IPR000504 GO:0003723
Bma12g00215 362 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 60 361 - -
Bma12g00215 362 SMART rrm1_1 153 229 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00215 K14837 NOP12; nucleolar protein 12 - pop:18094148 322.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00215 Bma-Chr12:2841157 Bma05g01222 Bma-Chr5:51629348 2.39E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00215 Bma_Chr12 FPKM 24.536585 26.373892 7.86178 5.418495 3.148166 2.716414 4.842157 4.10101 3.658563 4.523643