Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00221 ATGGGAAGTGGAGTTTCCAGCCTCGTCTCCTGTCTGAAACCGGACGACGGGACGACTACGCCCGCCGACCATAATTCGCACCACCATCAGGACGTCCTCTTCGCCGCCTCTGAGCCTCTTGATGAAACCCTAGGTCATTCCTTCTGTTACGTGAGGTCTTCGGCTCGCTTCCTCTCCCCAACTCACTCCGATCGTTTTCTGTCTCCTTCTCATTCTCTCGAAATCACAAGGATAAAGAATGAACATCCAGATGACAAACACTGTATTGTTAATGATAGAGTGAAAGGTCGTCTCAAGGTCACGAGGGCGTTCGGTGCTGGATTTCTTAAACAGCTAATGTACATTTCATCCATGTTTATTTGGGAGCAGCCAAAGTTGAATGCTGCATTATTGGAAATGTTTCGCAATGAATACATCGGCACTGCGCCGTACCTATCCTGCTCGCCTTCTCTCCGGCACCACAGACTATGTCCAATGGATCAGTTCTTAGTTCTCTCGTCTGACGGTCTATACCAGTATCTAAGCAATCAGGAAGTGGTTTCTCATGTGGAAAGTTTTATGGAGAAGTTTCCAGATGGAGATCCTGCTCAACACTTAATAGAGGAGCTTCTATCCCGGGCAGCCAAAAAAGCCGGGATGGATTTTCATGAATTATTGGACATTCCCCAAGGAGATCGTCGAAAATATCACGACGATGTAACTGTGATGGTTATTTCGCTCGAGGGAAGAATTTGGAAATCTTCAGGAAAGTACCCTTGA 759 46.9 MGSGVSSLVSCLKPDDGTTTPADHNSHHHQDVLFAASEPLDETLGHSFCYVRSSARFLSPTHSDRFLSPSHSLEITRIKNEHPDDKHCIVNDRVKGRLKVTRAFGAGFLKQLMYISSMFIWEQPKLNAALLEMFRNEYIGTAPYLSCSPSLRHHRLCPMDQFLVLSSDGLYQYLSNQEVVSHVESFMEKFPDGDPAQHLIEELLSRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP 252
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 2919914 2924236 - Bma007110.1 Bma12g00221 91647
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00221 252 Pfam Protein phosphatase 2C 68 210 IPR001932 -
Bma12g00221 252 PANTHER PROTEIN PHOSPHATASE 2C 29 25 73 - -
Bma12g00221 252 MobiDBLite consensus disorder prediction 1 26 - -
Bma12g00221 252 SMART PP2C_4 1 238 IPR001932 -
Bma12g00221 252 SUPERFAMILY PP2C-like 65 241 IPR036457 -
Bma12g00221 252 CDD PP2Cc 44 240 IPR001932 -
Bma12g00221 252 Gene3D - 44 247 IPR036457 -
Bma12g00221 252 PANTHER PROTEIN PHOSPHATASE 2C 74 250 IPR015655 GO:0004722|GO:0006470
Bma12g00221 252 PANTHER PROTEIN PHOSPHATASE 2C 25 73 IPR015655 GO:0004722|GO:0006470
Bma12g00221 252 PANTHER PROTEIN PHOSPHATASE 2C 29 74 250 - -
Bma12g00221 252 ProSiteProfiles PPM-type phosphatase domain profile. 1 240 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00102 Bma-Chr7:1758738 Bma12g00221 Bma-Chr12:2919914 4.27E-80 dispersed
Bma11g00119 Bma-Chr11:1139330 Bma12g00221 Bma-Chr12:2919914 1.05E-78 dispersed
Bma12g00221 Bma-Chr12:2919914 Bma03g00616 Bma-Chr3:5088697 3.33E-25 dispersed
Bma12g00221 Bma-Chr12:2919914 Bma04g00665 Bma-Chr4:6405083 4.47E-81 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00221 - - pop:18096949 314.309