Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma12g00221 | ATGGGAAGTGGAGTTTCCAGCCTCGTCTCCTGTCTGAAACCGGACGACGGGACGACTACGCCCGCCGACCATAATTCGCACCACCATCAGGACGTCCTCTTCGCCGCCTCTGAGCCTCTTGATGAAACCCTAGGTCATTCCTTCTGTTACGTGAGGTCTTCGGCTCGCTTCCTCTCCCCAACTCACTCCGATCGTTTTCTGTCTCCTTCTCATTCTCTCGAAATCACAAGGATAAAGAATGAACATCCAGATGACAAACACTGTATTGTTAATGATAGAGTGAAAGGTCGTCTCAAGGTCACGAGGGCGTTCGGTGCTGGATTTCTTAAACAGCTAATGTACATTTCATCCATGTTTATTTGGGAGCAGCCAAAGTTGAATGCTGCATTATTGGAAATGTTTCGCAATGAATACATCGGCACTGCGCCGTACCTATCCTGCTCGCCTTCTCTCCGGCACCACAGACTATGTCCAATGGATCAGTTCTTAGTTCTCTCGTCTGACGGTCTATACCAGTATCTAAGCAATCAGGAAGTGGTTTCTCATGTGGAAAGTTTTATGGAGAAGTTTCCAGATGGAGATCCTGCTCAACACTTAATAGAGGAGCTTCTATCCCGGGCAGCCAAAAAAGCCGGGATGGATTTTCATGAATTATTGGACATTCCCCAAGGAGATCGTCGAAAATATCACGACGATGTAACTGTGATGGTTATTTCGCTCGAGGGAAGAATTTGGAAATCTTCAGGAAAGTACCCTTGA | 759 | 46.9 | MGSGVSSLVSCLKPDDGTTTPADHNSHHHQDVLFAASEPLDETLGHSFCYVRSSARFLSPTHSDRFLSPSHSLEITRIKNEHPDDKHCIVNDRVKGRLKVTRAFGAGFLKQLMYISSMFIWEQPKLNAALLEMFRNEYIGTAPYLSCSPSLRHHRLCPMDQFLVLSSDGLYQYLSNQEVVSHVESFMEKFPDGDPAQHLIEELLSRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2919914 | 2924236 | - | Bma007110.1 | Bma12g00221 | 91647 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma12g00221 | 252 | Pfam | Protein phosphatase 2C | 68 | 210 | IPR001932 | - | |
| Bma12g00221 | 252 | PANTHER | PROTEIN PHOSPHATASE 2C 29 | 25 | 73 | - | - | |
| Bma12g00221 | 252 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Bma12g00221 | 252 | SMART | PP2C_4 | 1 | 238 | IPR001932 | - | |
| Bma12g00221 | 252 | SUPERFAMILY | PP2C-like | 65 | 241 | IPR036457 | - | |
| Bma12g00221 | 252 | CDD | PP2Cc | 44 | 240 | IPR001932 | - | |
| Bma12g00221 | 252 | Gene3D | - | 44 | 247 | IPR036457 | - | |
| Bma12g00221 | 252 | PANTHER | PROTEIN PHOSPHATASE 2C | 74 | 250 | IPR015655 | GO:0004722|GO:0006470 | |
| Bma12g00221 | 252 | PANTHER | PROTEIN PHOSPHATASE 2C | 25 | 73 | IPR015655 | GO:0004722|GO:0006470 | |
| Bma12g00221 | 252 | PANTHER | PROTEIN PHOSPHATASE 2C 29 | 74 | 250 | - | - | |
| Bma12g00221 | 252 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 240 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma07g00102 | Bma-Chr7:1758738 | Bma12g00221 | Bma-Chr12:2919914 | 4.27E-80 | dispersed | |
| Bma11g00119 | Bma-Chr11:1139330 | Bma12g00221 | Bma-Chr12:2919914 | 1.05E-78 | dispersed | |
| Bma12g00221 | Bma-Chr12:2919914 | Bma03g00616 | Bma-Chr3:5088697 | 3.33E-25 | dispersed | |
| Bma12g00221 | Bma-Chr12:2919914 | Bma04g00665 | Bma-Chr4:6405083 | 4.47E-81 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma12g00221 | - | - | pop:18096949 | 314.309 |