Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00225 ATGAAAAAATGGCTGAATATCAAGCCTAAGGTGTGTGATTTCAGTGAGGATGAAATCGACGCCGAAACAGAGAGTGAAGATGAGGATACTCCTAAGAGCTATCCGATCAGGCACCGTAGAGGAAAATCAGAGACTCTGAGAGTTCAATACATAAATACGAAGGATGTGAGGGTTACGATTGGCACTTGGAACGTTGCCGGACAATCCCCGTGTGAAGACCTTGCATTAGACGATTGGCTCCAGACAGAAGATCCAGCAGATTTATACATAATTGGTTTTCAGGAGGTTGTTCCTTTGAATGCTGGGAATGTGCTAGGAGCGGAGGATAGCCGGCCGATACCAAAGTGGGAGGCGATCATTCGAAGAACTTTGAACAAGTCTTTCGAGCCTGAAAGCAAACACAAAAGCTATAGCGCCCCGCCTTCTCCTGTTATGAGGACATCTTCCGTTGAAGATGTACTTGCAGATGAGGCCATTGATAATCAATTAGACATGATTACCGAAGAATTTGACCTGGAACTGCATGCTTTAACTACCAGAAATCTACAGTTGAAAAGGATTTACGGCATTGATTCCGATAGTAGATTGGACTGGCCTGAGCAGTCATTAGATTCAGTTCCTCGAGTAAATTCAAAACTCCGACGAGCACTCAGCAGCTCTGCCAGAACAGGCTTCAATTCGTTTGGAAATCCTATGTCCTTTGGTCCTCATCAATTTGCGTTAAATGTTGGCGGGTTAAGAAGATCGTACCATAGTTCGGGAAACTTGATATCGATCTTGAAGGAACAGCAAGAGAAGGAAGAAGTGATCGATTCTCTCTCTCATGTGAGTGATACTTTAATCGAAGAGGAAGATGATGTTTTCTTGGAAGGACACATGGAGGAGGAAGATGGTGGATTTGCTACTACAAATGGAGCGAAATTGCGTTCTAAATATGTGCGAATAGTTGGAAAGCAGATGGTGGGGATTTATGTGTCGGTTTGGGTTCGCAAGAGGTTGAGAAGACATGTAAACAATTTGAAAGTTTCTCCGGTTGGGATCGGTCTGATGGGTTACTTGGGAAATAAGGGATCTGTTTCTATTAGCATGTCCCTTTTTCAATCAAGGTTGTGTTTTGTCTGTTCTCATCTAACATCTGGTCAGAAAGATGGGGCCGAGCAGAAGCGAAATGCAGATGTGAATGAAATAATAAGGCGGACCCGTTTTTCGTCTGTCGTAGATGCAGAATCCAATCAACCTCATACCATCCCGTCTCACGACAAGATATTCTGGTTTGGAGATCTCAACTATCGACTTAATATGTTGGATTCGGATGTAAGGCAACTCGTAAAGCTAAAACAGTGGGATGAACTCATGAACTATGATCAACTTAGCCGAGAACTTCACAGTGGGCGTGTATTCGAGGGATGGAAAGAGGGAGCTATAGACTTCCCGCCTACTTATAAATATGAAATCAACTCCACCAGATATGTCGGAGAGAATCCGAAAGAGGGAGAGAAGAAAAGATCTCCAGCTTGGTGTGATCGGATACTATGGCTTGGAAAGGGAATAAAACAGCATTGTTACAAGCGATCTGAGATTCAACTCTCGGATCATCGGCCAGTCAGTTCAATCTTTGTGGCAGAAGTTGAAGTTTTTGACCGACGAAAGCTGCAAAGAGCGCTTAACATCACAACCGCAGCAGTTCATCCTGAAATTTTCTTTGAAGAAAATGATGAAAGATAA 1725 43.36 MKKWLNIKPKVCDFSEDEIDAETESEDEDTPKSYPIRHRRGKSETLRVQYINTKDVRVTIGTWNVAGQSPCEDLALDDWLQTEDPADLYIIGFQEVVPLNAGNVLGAEDSRPIPKWEAIIRRTLNKSFEPESKHKSYSAPPSPVMRTSSVEDVLADEAIDNQLDMITEEFDLELHALTTRNLQLKRIYGIDSDSRLDWPEQSLDSVPRVNSKLRRALSSSARTGFNSFGNPMSFGPHQFALNVGGLRRSYHSSGNLISILKEQQEKEEVIDSLSHVSDTLIEEEDDVFLEGHMEEEDGGFATTNGAKLRSKYVRIVGKQMVGIYVSVWVRKRLRRHVNNLKVSPVGIGLMGYLGNKGSVSISMSLFQSRLCFVCSHLTSGQKDGAEQKRNADVNEIIRRTRFSSVVDAESNQPHTIPSHDKIFWFGDLNYRLNMLDSDVRQLVKLKQWDELMNYDQLSRELHSGRVFEGWKEGAIDFPPTYKYEINSTRYVGENPKEGEKKRSPAWCDRILWLGKGIKQHCYKRSEIQLSDHRPVSSIFVAEVEVFDRRKLQRALNITTAAVHPEIFFEENDER 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2952905 2956918 - Bma007114.1 Bma12g00225 91651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00225 574 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 31 570 - -
Bma12g00225 574 SMART i5p_5 232 547 IPR000300 GO:0016791|GO:0046856
Bma12g00225 574 Gene3D Endonuclease/exonuclease/phosphatase 242 567 IPR036691 -
Bma12g00225 574 Gene3D Endonuclease/exonuclease/phosphatase 39 142 IPR036691 -
Bma12g00225 574 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 31 570 IPR045849 GO:0004445|GO:0046855
Bma12g00225 574 SUPERFAMILY DNase I-like 48 558 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00225 K24221 IP5P1_2; type I inositol polyphosphate 5-phosphatase IP5P1/2 [EC:3.1.3.56] - tcc:18606093 813.913
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00225 Bma-Chr12:2952905 Bma13g00016 Bma-Chr13:300797 2.24E-29 dispersed
Bma14g00909 Bma-Chr14:10259817 Bma12g00225 Bma-Chr12:2952905 4.53E-33 dispersed
Bma12g00225 Bma-Chr12:2952905 Bma01g01429 Bma-Chr1:24253914 2.18E-159 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g605 . Blo03g00111 Bda06g01281 . . Bpe07g00226 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0619 Cone12ag0604 . . . . . . . . Bda07g00843 . . . . Bma12g00225 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004106 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00225 Bma_Chr12 FPKM 24.540203 26.909445 10.063776 10.653146 6.009213 4.231568 5.255256 2.222515 1.941694 2.48821