Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00227 ATGGTTTGCACTGCCAGTGATTTGCAGGGGTGGAAAGACTTTCCGAAAGGCCTCCGAGTTCTTCTCCTCAACGGCCACGCCGAATCTGCAAATGAAATAAAATCCAAGCTTGAAGAAATGGAGTATATTGTTTACACGTATCGAGACGAGAATGAAGCTCTCTCGGCAATTGCAAGCAAAAATGAAACATTTCATGTTGCGATCGTAGAGGTGAGTGCTAGTAATTGTGAAGGAAGTTTCAAGTTTTTAGAGTCTGCAAAGGACTTGCCAACTGTTATGACTTCTAATTTCGATTGCCTAAATACGACGATGAAGTGCATAGCTCTCGGCGCAGTTGAGTTTCTACGTAAACCACTTTCCGAGGACAAACTTAGGAACATTTGGCAGCATGTTCTTCACAAGGCGTTCAATGCAGGGGAGAGCGGACTCTCGGTTTCTTTAAAGCCGATCAAAGAATCAGTACTATCCATACTTCAACTCCGAGCAGAAAACGGAGAAGATACGATGCAAATATCGGTACAAACTGATGTTTTGTCCGACAAAAATGGAGAAGAGGACCCAGAAGGTAGCGATCACTATCCCGCTCCTTCAACCCCGCAATTAGGAGGGAGATTAGTGGACCATGGGGATTGTCAAGAACAGTCTAACCATTCGTTAGAGAAATCTGTCGACATTATCTGCGATGATTCACCTGTTGAAGACACTCTTCAAGTTGGACAACTCGGGTTATCTGAAATGAAAGAAGTGAAAGTGGAAGAAGAGTCTACTAATCTTCATATTCATAACACCGATAAAAGTGGTGAAAACGTGATTAAAACAACTGATCTCGATACTTTGTCTAGGACAAGACCTAACCGGAAAAAAATCAAGGTCGATTGGACATCTGAGCTACACAAAAAGTTTGTGAAGGCGGTAGATCAATTAGGCATTGATCAAGCTATTCCTTCGCGAATACTTGAACTAATGAAAGTCGAAGGTTTGACAAGGCATAATGTTGCAAGCCATCTCCAGAAGTACCGGATGCAAAGGAGACAAATCTTGCCAAAAGAAGAAGATACTGGATGGACAAACGCTAAAGATTCGACCAGGAGGACTTGCACTTACTACCCGCAAAGGCCTATAATGGCCTTTCCGCCGTATTATACTTACAATTACAATTACAATTACGATCTGCAGAAACTCACAAGCCCGGTTTATCCGATCTGGGGACAAACCGGAGCTCATCAAGGGGTAGTTCATCCATGGACCCCGCCTCCCTATCATCCTCATTGGCCACCTCTCGATGCTTGGCATTGGCGGATTTCACCAGAGGTACGTGCCGACGCATGGGGTTGCCCCGTCATGCCGCCCCCTCATGGTGCTTATTCTACTCATTCCCAAAACATTTCAAGTTACCACGACTCCCGCTCGTTCGATAATGGCTTTTCCATGACACACACATCGGTCGACCTTCAACCGGATGAGGAGGTAATAGACATGGTTGTGAAAGATGCAATGAGCAAACCATGGCTGCCTCTTCCTTTGGGGCTTAAGCCTCCTTCAACCGAGAGTGTTTTGACTGAGCTCTCCCGGCGAGGCATCTCCACCGTCCCTTCTCACATCACCGGCTCTAGACCACGCTGA 1623 45.66 MVCTASDLQGWKDFPKGLRVLLLNGHAESANEIKSKLEEMEYIVYTYRDENEALSAIASKNETFHVAIVEVSASNCEGSFKFLESAKDLPTVMTSNFDCLNTTMKCIALGAVEFLRKPLSEDKLRNIWQHVLHKAFNAGESGLSVSLKPIKESVLSILQLRAENGEDTMQISVQTDVLSDKNGEEDPEGSDHYPAPSTPQLGGRLVDHGDCQEQSNHSLEKSVDIICDDSPVEDTLQVGQLGLSEMKEVKVEEESTNLHIHNTDKSGENVIKTTDLDTLSRTRPNRKKIKVDWTSELHKKFVKAVDQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMQRRQILPKEEDTGWTNAKDSTRRTCTYYPQRPIMAFPPYYTYNYNYNYDLQKLTSPVYPIWGQTGAHQGVVHPWTPPPYHPHWPPLDAWHWRISPEVRADAWGCPVMPPPHGAYSTHSQNISSYHDSRSFDNGFSMTHTSVDLQPDEEVIDMVVKDAMSKPWLPLPLGLKPPSTESVLTELSRRGISTVPSHITGSRPR 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2970639 2973809 - Bma007116.1 Bma12g00227 91653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00227 540 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 538 - -
Bma12g00227 540 MobiDBLite consensus disorder prediction 179 214 - -
Bma12g00227 540 Gene3D - 285 346 - -
Bma12g00227 540 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Bma12g00227 540 SUPERFAMILY CheY-like 16 135 IPR011006 -
Bma12g00227 540 Gene3D - 18 141 - -
Bma12g00227 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 285 344 IPR017930 -
Bma12g00227 540 SUPERFAMILY Homeodomain-like 287 344 IPR009057 -
Bma12g00227 540 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 288 342 IPR006447 GO:0003677
Bma12g00227 540 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 538 IPR044825 GO:0003700|GO:0045893
Bma12g00227 540 Pfam Myb-like DNA-binding domain 291 340 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00227 - - - jre:108979475 590.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00227 Bma-Chr12:2970639 Bma12g00832 Bma-Chr12:38612094 3.40E-29 dispersed
Bma12g00226 Bma-Chr12:2962047 Bma12g00227 Bma-Chr12:2970639 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58094 PF00249 Myb_DNA-binding 2.20E-07 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00227 Bma_Chr12 FPKM 1.147705 0.0 0.470766 0.0 0.486487 0.0 0.0 6.412255 9.469481 9.799281