Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00228 ATGGTCATGAAGCATCAATTGCCCGGCAACAGATCACGGGGCCCGATTTCTATTTTTGCCGTCATTGGTCTTTGCTGCTTCTTCTACATTTTGGGAGCATGGCAAAGGAGCGGATTCGGAAAAGGAGATCGTATTGCAAAGGCGGTCACAAAGCAGACAGATTGCGAGATAATCAAAGATTTAGATTTTGAATCTCATCACAACATGGCAGAGATTCCCAACTCTTCTGAGACAAAATCGGAGTTGTTTAAGCCGTGTGATGTGAGTTACAAAGATTACACTCCCTGTCAAGAACAAGATCGAGCTATGAAATTCCCAAGAGAAAATATGAATTATAGAGAAAGGCATTGTCCTCCTGACGGAGAAAAGCTGCATTGTCTTGTTCCAGCGCCAAAGGGGTATAAAGCTCCATTTCCATGGCCAAAGGGCCGAGATTATGTTCACTACGCTAATGTTCCTTACAAGAATCTAGCGATCGACAAAGCTGCCCAAAATTGGGTACAGTTTCAAGGAGATGTATTCAAATTTCCGGGCGGTGGTACTATGTTTCCTCAAGGAGCCGATGCTTATATCAATGAACTAGCAACTGTTATCCCATTGTCCGATGGTTCCATTAGAACTGCCCTCGATACTGGTTGTGGAGTTGCAAGCTGGGGAGCATACTTGATGAAAAGAAATGTATTGGCCATGTCCTTTGCGCCGAGAGACAACCATGAAGCACAAATCCAATTTGCATTGGAGAGAGGTGTGCCTGCTTTTATTGGCGTTCTCGGTACAATTCGTCTTCCATTTCCGTCACGGGCCTTTGATATGGCTCAGTGCTCTCGATGCCTAATCCCTTGGACTTCAAATGGTGGTATGTATCTGATGGAGGTCGACCGGGTCCTTAGACCGGGTGGGTATTGGATCTTATCGGGTCCTCCAATTAACTGGAAAACCTACTACAAGACTTGGGAGCGAACCAAGGCGGATCTCAAGGCGGAGCAGAAGAGCATAGAACATCTGGCCAAGCTTCTATGCTGGGAGAAAAAGTATGAGAAAGGAAATATTGCGATATGGAGAAAGAAAATAAATGATAAATCTTGCCAAAGCAAGTATCGTAATATTTGCAAAGCAAAAGATTCCGATGATGTCTGGTACCAGAAGATGGAGTCGTGCATTACTCCCTTCCCGGACGTAATGAATGACAATGAAGTTTCCGGCGGAAAATTGGAGAGGTTTCCAATGAGACTTTATTCAATTCCTCCAAGAATATCTGCAGGAATAGTTCCTGGGGTTACAGACAAAATGTACCAAGAAGACAATAAACTTTGGATAAAGCGATTAAATTTCTACCGAAAGATCAATAAGATGATCGGAACTACTAGAATCAGGAATGTGATGGATATGAATGCAGGGCTCGGTGGATTCGCAGCGGCCGTTCACTCGACAAGATCTTGGACGATGAATGTAGTCCCCACAATTGCCAATAACACTTTAGGGGTTGTTTACGAGAGAGGTCTTACTGGCATGTATCATGACTGGTGCGAAAGCTTCTCTACTTACCCGAGAACGTACGACTTTATTCACGGCAGTGGCGTCTTCAGCTTGTATCAGTATAAGTGCAATTTGGAGTACATACTCTTGGAAATGGATCGAATACTGAGGCCAGAGGGCACGGTAATTCTCCGAGACGGAGTCGATGTCTTGGCGAAGGTCGTGGAAATAGCATCAGGCATGAGATGGGATGTCAAAATGATGAATCACGAGGACGGACCGCTTGTGCCGGAGAAGATAGTGGTTGCCGTTAAACAATATTGGGTCGCCGGAGACAGATAG 1818 44.88 MVMKHQLPGNRSRGPISIFAVIGLCCFFYILGAWQRSGFGKGDRIAKAVTKQTDCEIIKDLDFESHHNMAEIPNSSETKSELFKPCDVSYKDYTPCQEQDRAMKFPRENMNYRERHCPPDGEKLHCLVPAPKGYKAPFPWPKGRDYVHYANVPYKNLAIDKAAQNWVQFQGDVFKFPGGGTMFPQGADAYINELATVIPLSDGSIRTALDTGCGVASWGAYLMKRNVLAMSFAPRDNHEAQIQFALERGVPAFIGVLGTIRLPFPSRAFDMAQCSRCLIPWTSNGGMYLMEVDRVLRPGGYWILSGPPINWKTYYKTWERTKADLKAEQKSIEHLAKLLCWEKKYEKGNIAIWRKKINDKSCQSKYRNICKAKDSDDVWYQKMESCITPFPDVMNDNEVSGGKLERFPMRLYSIPPRISAGIVPGVTDKMYQEDNKLWIKRLNFYRKINKMIGTTRIRNVMDMNAGLGGFAAAVHSTRSWTMNVVPTIANNTLGVVYERGLTGMYHDWCESFSTYPRTYDFIHGSGVFSLYQYKCNLEYILLEMDRILRPEGTVILRDGVDVLAKVVEIASGMRWDVKMMNHEDGPLVPEKIVVAVKQYWVAGDR 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2982770 2985811 - Bma007117.1 Bma12g00228 91654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00228 605 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 320 IPR029063 -
Bma12g00228 605 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 440 571 IPR029063 -
Bma12g00228 605 Gene3D Vaccinia Virus protein VP39 188 378 IPR029063 -
Bma12g00228 605 PANTHER METHYLTRANSFERASE PMT14-RELATED 6 602 - -
Bma12g00228 605 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 92 597 IPR004159 GO:0008168
Bma12g00228 605 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 6 602 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00228 - - - zju:107430477 1013.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00394 Bma12g00228 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00394 Bma-Chr5:12277407 Bma12g00228 Bma-Chr12:2982770 0 dispersed
Bma07g01053 Bma-Chr7:42268330 Bma12g00228 Bma-Chr12:2982770 0 dispersed
Bma12g00228 Bma-Chr12:2982770 Bma14g01616 Bma-Chr14:33910150 0 dispersed
Bma12g00228 Bma-Chr12:2982770 Bma12g00229 Bma-Chr12:3013404 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g608 . Blo03g00109 . . . Bpe07g00228 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0602 . . . . . . . . . . . . Bma05g00394 Bma12g00228 . . . . . . Car16g01026 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005581 1 2 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00228 Bma_Chr12 FPKM 2.087927 2.112571 1.689692 2.050143 0.801716 0.666346 0.682409 13.89601 13.606325 15.105927