Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00230 ATCAGATTCTTATTCTCAGTTCAATTTTGTGGTGGCAGCAAAAGCTCTCTATCAAAACTTGCTCCACTCGAGGCGATTCTATTCGACGTAGACGGAACATTATGTGATACCGATCCACTCCACTACTATGCTTTCCGGGAAATGCTTCAAGAGATTGGCTTCAACGGAGGAATTCCGATAGACGAAGAATTCTTCATTGAGAATGTTGCTGGCAGGCACAACACCGATATTGCAATGAGACTCTTCCCCGATGATTATGAGCGAGGATTAAAATTTGCCGATGAAAAGGAAGTCATGTTTAGAAAATTAGTTACGGAGCAAGTGAAGCCTTTGAGCGGTCTGTTGAAGTTGAAGAAATGGATCGAAGATCGTGGTTTGAAGCGGGCAGCAGTTACTAACGCTCCGAGAGCTAATGCCGAGCTAATGATCTCAACTATCGGCCTTTCAGATTTCTTCGAAGCCATTATTATAGGCGATGAATGTGAACATGCGAAGCCACATCCGGACCCCTACTTGAAGGCTCTCAAAGTACTCAATGTATCCAAAGATCACACTTTCATATTCGAGGACTCGGTGTCGGGAATAAAAGCAGGAGTTGCGGCAGGGATGCCAGTAGTTGGTATAGCAACTAGAAATCCTGAGCATTTGCTGATGGAAGCAAATCCAACCTTCCTTATAAAAGATTACGAGGATCCAAATTTATGGTCTGCTTTAGAACAGCTTGATCAACAAAGGTAA 738 43.36 IRFLFSVQFCGGSKSSLSKLAPLEAILFDVDGTLCDTDPLHYYAFREMLQEIGFNGGIPIDEEFFIENVAGRHNTDIAMRLFPDDYERGLKFADEKEVMFRKLVTEQVKPLSGLLKLKKWIEDRGLKRAAVTNAPRANAELMISTIGLSDFFEAIIIGDECEHAKPHPDPYLKALKVLNVSKDHTFIFEDSVSGIKAGVAAGMPVVGIATRNPEHLLMEANPTFLIKDYEDPNLWSALEQLDQQR 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3019879 3021253 + Bma007120.1 Bma12g00230 91656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00230 245 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 105 208 IPR006439 -
Bma12g00230 245 Gene3D Putative phosphatase; domain 2 38 106 IPR023198 -
Bma12g00230 245 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 23 231 - -
Bma12g00230 245 CDD HAD_BPGM-like 25 210 - -
Bma12g00230 245 SFLD Haloacid Dehalogenase 23 231 - -
Bma12g00230 245 Pfam Haloacid dehalogenase-like hydrolase 26 207 IPR041492 -
Bma12g00230 245 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 23 34 IPR006439 -
Bma12g00230 245 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 121 134 IPR006439 -
Bma12g00230 245 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 152 168 IPR006439 -
Bma12g00230 245 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 12 244 - -
Bma12g00230 245 SUPERFAMILY HAD-like 18 240 IPR036412 -
Bma12g00230 245 Gene3D - 24 231 IPR023214 -
Bma12g00230 245 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 12 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00230 - - - qsu:111999063 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00615 Bma-Chr1:5548705 Bma12g00230 Bma-Chr12:3019879 3.42E-18 dispersed
Bma12g00230 Bma-Chr12:3019879 Bma12g00258 Bma-Chr12:3347258 3.16E-173 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g622 . Blo03g00108 . . . Bpe07g00230 . . Cmo06g00860 . . . . . Sed07g1320 . . Bhi11g00108 Tan01g2131 Cmetu06g0814 . . . . . . . . . . . . . . . Lsi07g01233 . . Cme06g02502 . . . . . . . Bma12g00230 . . . Cma06g00838 . . . . . . . . . . . . . . . . . . . . Csa03g00207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00230 Bma_Chr12 FPKM 18.005077 20.275017 5.434877 5.966784 1.499364 1.238592 1.229774 0.474238 0.495741 0.571278