Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00234 ATGGGTGGACCTACCAATGGCGGTGAAGCGAGAGCGATTTCCGGAAGTGACGGAATGCAGGGGGCGGTTCCTCCGCCGATTCTTAACGCGAATGCGCCGCCGCCGTTTTTGAGCAAGACGTATGATATGGTGGATGACCCTGCCAGTGACGCGATAGTGTCGTGGAGCCACACTAACAATAGCTTCGTGGTTTGGAACCCGCCAGAATTTGCTAGAAACCTCTTGCCGAAGTACTTTAAGCACAATAACTTCTCTAGCTTCGGCTTCAGGAAGGTTGATCCAGATCGTTGGGAATTTGCAAATGAAGGGTTCTTAAGGGGTCAGAAGCACTTGCTTAAGAGTATCAATCGTCGAAAACCTGCTCATGGACATAGTCAACCACCACAACAATCTCAAGGACAAAATTCATCTCCATCTGGGGGGGCTTGTGTAGAGGTTGGAAAGTTTGGTCTAGAAGAAGAGGTTGAGAGGCTTAAGAGAGACAAGAATGTGCTCATGCAAGAACTTGTCAGGCTGAGGCAGCAGCAACAGACTACTGATAACCAGCTCCAAGTAATGGTGCAGCGTCTGCAAGGAATGGAGCAAAGGCAGCAGCAGATGATGTCATTCCTGGCGAAAGCTGTGCAGAGCCCTGGATTTTTGTCTCAGTTTGTGCAGCAGCAAAATGAAAGTAGTAGACGCATTAGTGAAGCCAACAAAAAGCGTAGGCTTAAGCGGGATGGAATTGCTGAGTCCAATCTTTCTTCAGCTCCTGAGGGACAGATTGTAAAATATCAACCACCACTGATGAATGAGGCAGCAAAGGCAATGTTGAGGCAAATAATGAACATAGACACTTCACCAGTTGAACCTTTTGATAACAACGCAGATAGTTTCTTGATTGGTGATGGCTTGTCACCATCCGCAGCTAAAGATAGTGGCAGCTCTACGAGCTGTGTATCAGGAGTGACTCTCCAAGAGGTCCCTCCATCTTCAGGTAAAACATTTGTTGCAGCTGCTTCTGGTATCTCAGGTCAAAGTCCCTCTGCCACAATATCAGAAATACAATCTCCCCCTTCGACGACTTCTGGGAAAATTACAACACCATTTCCTGATATCGGTGTGCTAATTCAAGGGCAAGACTCTCCTCCCTTTTTGTCGTCTCAGACAGATGTCGTAATCCCTGAGCTTTCTCAAGTGCCAGAACTTGTCCCCGAGAATATTGGCAGTGTTTCGGATGAAGGTTATATGGGGCAAACAAGAGGCAGTGGTGGATATATTGATCCAAATTCTTTGGATATAATTGGGACCATGCCTATTGAAATTGATAATATTTCGACTGATCCGTACATTGATGCATTGATGGACAATTCCTTGGATAATTCGAACTTCTGGAGTGAGCTTCTCCTCCAAAGCCCAGTTGAAGAAGAACTAGACGCAACCTTTGCAGAGGAATTATCCGAAGGAAATGCCCAGGGTGAGAATGGATGGGACAAATTGCAGTTTATGGATAAACTTACAACACAGATGGGCCTTCTTACTTCGAATAACAAAAAGGATTGA 1542 45.98 MGGPTNGGEARAISGSDGMQGAVPPPILNANAPPPFLSKTYDMVDDPASDAIVSWSHTNNSFVVWNPPEFARNLLPKYFKHNNFSSFGFRKVDPDRWEFANEGFLRGQKHLLKSINRRKPAHGHSQPPQQSQGQNSSPSGGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQVMVQRLQGMEQRQQQMMSFLAKAVQSPGFLSQFVQQQNESSRRISEANKKRRLKRDGIAESNLSSAPEGQIVKYQPPLMNEAAKAMLRQIMNIDTSPVEPFDNNADSFLIGDGLSPSAAKDSGSSTSCVSGVTLQEVPPSSGKTFVAAASGISGQSPSATISEIQSPPSTTSGKITTPFPDIGVLIQGQDSPPFLSSQTDVVIPELSQVPELVPENIGSVSDEGYMGQTRGSGGYIDPNSLDIIGTMPIEIDNISTDPYIDALMDNSLDNSNFWSELLLQSPVEEELDATFAEELSEGNAQGENGWDKLQFMDKLTTQMGLLTSNNKKD 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3039218 3042837 + Bma007124.1 Bma12g00234 91660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00234 513 MobiDBLite consensus disorder prediction 227 242 - -
Bma12g00234 513 MobiDBLite consensus disorder prediction 123 141 - -
Bma12g00234 513 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma12g00234 513 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma12g00234 513 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 499 IPR027725 -
Bma12g00234 513 Coils Coil 148 175 - -
Bma12g00234 513 MobiDBLite consensus disorder prediction 1 22 - -
Bma12g00234 513 Gene3D - 28 119 IPR036388 -
Bma12g00234 513 SMART hsfneu3 32 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma12g00234 513 SUPERFAMILY Winged helix DNA-binding domain 31 118 IPR036390 -
Bma12g00234 513 Pfam HSF-type DNA-binding 36 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma12g00234 513 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 17 499 - -
Bma12g00234 513 MobiDBLite consensus disorder prediction 220 248 - -
Bma12g00234 513 MobiDBLite consensus disorder prediction 118 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00234 K09419 HSFF; heat shock transcription factor, other eukaryote - tcc:18606792 602.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00185 Bma-Chr1:1675327 Bma12g00234 Bma-Chr12:3039218 4.87E-32 dispersed
Bma02g01198 Bma-Chr2:54072709 Bma12g00234 Bma-Chr12:3039218 5.42E-67 dispersed
Bma05g01091 Bma-Chr5:49637458 Bma12g00234 Bma-Chr12:3039218 1.83E-58 dispersed
Bma06g00874 Bma-Chr6:43533852 Bma12g00234 Bma-Chr12:3039218 1.54E-55 dispersed
Bma12g00234 Bma-Chr12:3039218 Bma15g00023 Bma-Chr15:271501 1.08E-57 dispersed
Bma15g00954 Bma-Chr15:36052095 Bma12g00234 Bma-Chr12:3039218 1.66E-11 transposed
Bma12g00234 Bma-Chr12:3039218 Bma05g00705 Bma-Chr5:41049002 4.14E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g706 Blo02g00983 . . . . Bpe07g00232 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0482 Cone12ag0477 . . . . . . . . . . . . . Bma12g00234 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004373 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58095 PF00447 HSF_DNA-bind 2.30E-22 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00234 Bma_Chr12 FPKM 2.553279 2.610376 6.657908 5.291067 1.969678 1.767382 2.154001 8.040117 7.923609 7.85846