Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00235 ATGAGTTTTCAAGATATCGAGGCGGGCCGGCCCTTTGCTTATTCGAGGCGGGACGCAATCAATGGCAAGCAGGACCCGACACAGGCCGTCGCTTCTGGTATATTTCAGATCAACACCGCTGTCGCCACCTTTCAGAGGCTCGTCAATACTCTGGGAACTCCGAAGGACACCCCCGAGCTCCGAGAGAAGCTGCATAAGACGAGGCTTCATATTGGACAGTTGGTGAAAGATACTTCTGCAAGACTAAAACAAGCTAGTGAAATAGATCATCAAACTGAAGTTAAAGCCAGCAAGAAAATTGCAGATGCAAAGCTCGCTAGAGACTTTCAAGCCGTGCTGAAAGAATTTCAAAAGGGTCAACGACTTGCAGTCGAGAGAGAAACTGCATATACTCCTTTTGTTCCTCAAGCAGTTCTCCCTTCTAGCTACACGGCCAGCGAGATCGATGTACGATCAGATAAGAATCCCGAACAGCGTGCACTCCTTGTTGAATCTAGGAGACAAGAAGTACTGCTTTTGGACAACGAAATTTCATTTAACGAGGCGATAATCGAGGAAAGAGAGCAAGGGATCGAAGAAATACAACAGCAAATAGGGGAAGTGAATGAGATTTTCAAGGATTTAGCAGTTCTGGTGCATGAGCAGGGAGCCATGATTGACGATATTGGATCCAACATCGAGAGTTCCCACGCTGCAACTTCGCAAGCGACTTCCCAACTCGTGAAAGCCGCAAAGACCCAAAGATCAAATTCGTCACTGTCCTGCTTGCTGTTGGTGATCTTTGGGATATTGCTTCTCATAGTTATCATACTCGTCGCTGCTTGA 825 46.91 MSFQDIEAGRPFAYSRRDAINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSARLKQASEIDHQTEVKASKKIADAKLARDFQAVLKEFQKGQRLAVERETAYTPFVPQAVLPSSYTASEIDVRSDKNPEQRALLVESRRQEVLLLDNEISFNEAIIEEREQGIEEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIESSHAATSQATSQLVKAAKTQRSNSSLSCLLLVIFGILLLIVIILVAA 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3044573 3048195 - Bma007125.1 Bma12g00235 91661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00235 274 Gene3D - 174 274 - -
Bma12g00235 274 SMART SynN_4 16 128 IPR006011 GO:0016020
Bma12g00235 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
Bma12g00235 274 Gene3D - 20 134 - -
Bma12g00235 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma12g00235 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Bma12g00235 274 SMART tSNARE_6 176 243 IPR000727 -
Bma12g00235 274 PANTHER SYNTAXIN 7 273 IPR045242 -
Bma12g00235 274 CDD SNARE_Qa 184 242 - -
Bma12g00235 274 Pfam SNARE domain 218 269 IPR000727 -
Bma12g00235 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Bma12g00235 274 PANTHER SYNTAXIN OF PLANTS PROTEIN 7 273 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00704 Bma12g00235 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00235 Bma-Chr12:3044573 Bma11g00374 Bma-Chr11:4077034 2.49E-10 dispersed
Bma01g01234 Bma-Chr1:15538420 Bma12g00235 Bma-Chr12:3044573 3.29E-87 transposed
Bma06g00441 Bma-Chr6:16972276 Bma12g00235 Bma-Chr12:3044573 1.47E-86 transposed
Bma12g00235 Bma-Chr12:3044573 Bma05g00704 Bma-Chr5:41032743 1.34E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00235 - K08488 bhj:120089793 417.542