Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00240 GAAATGGAGAATAAGGAGGGTGAAAACTGGAGGAAATTGGTGACCAACATGCTCCCACCTGGTGCTTCTCTTCCTGAAAATACTAATCTAGATTACTCCATAGCTTTAGAATACAGAGGCCCACCAGTCTCCTATGATGTTCCTCGGGTCGAACCACTCGATGTGAATTCACGGGAAATTCCAGTCGCCGAACCTTTATCTGAATCACGTCGGTCAATAGCAAATGCTAGACATCCAATAATTGAGCCTATTCCTTTACCAGTTTCTTATATTGCTGATGTCACTAATTCAGCCACTCAAAGTCCGAGGGTATCGGCAAGTTCGGAATCTGTAGTGTCTGTCTTGCAAAACCCAGATTTTTCTTCCGCTTCTCCATCGGCCTCTTATAATCCTCTGAATAATCAGCCTAATCATGTGGATAATGAGGTTAGGAGGACTCCTGTGGTGACTTTCAACACAGTTGATCGGTCCGAAGGAGAAAAGCCGGATAAAATCATTAGTTCCAACTTAAATTTCACTGGCAAGCTTAGCCCCCATGCAAGCAATGGGAACACTGAAGTTTACATAAATGGTCGAGAAATTACGAAACTTGAATTGAGGTTGGCGAATGTGCAATGTCCTCGTGACACTCATTTTTGGGTATATGATGATGGTCGATACGAGGAGGAAGGGCAGAATAATATCAGGGGCAACATTTGGGAGAAGGCATCAACACGGTTTGTTTGTGCTTTGTTCTCTTTGCCTGTGCCCCGTGGTCAACCTCACGGAGTAAGAAACGAGGCTAGCACTTACACTACAGTTCCTAACTATTTGGAGCAGAAAAAGGTTCAGAAGCTCCTTCTTATTGGGATTCATGGTTCAGGAACTAGCACTATTTTTAAACAGGTATTGCTCAAAAATAGATGTCCTCCCTTGGATAAGTGTATTGCGTATGAACAAACTCTAAGGAGTGTAATTTGGCAGGCAAAATTACTTTATGGGAATAGATTTAGTGCAGAAGAATTGCAAGATATTAAGCTGATGATTCAGAGCAACTTGTACAAATATTTGAGCATTGTGCTTGATGGACGTGAACGATTTGAGGAAGAGGTCGCATATAGGATGAAAGCAATAAAATTCCATGACCAAGTTTCTGTAGGCTGTATGGTGGCTTTGTTGGTTAATTGTCAAATGCAATCTTGTGCTGTGGAGGTGTCTAGCAATGAATATGAACCTTCAGAAAGAGACATTATATATGCAGAAGGGGTGACTCAAGGAAATGGTTTAGCTTTCATGGAATTCTCGCTCGACGATCGCAGTCCAATGTCTGAAACCTACACTGATAATTTAGAGGCTCCACCCCCGCCGCTGACCAAATACCAGCTTATAAGGGTAAATGCGAAGGGGATGAACGATGGGTGTAAATGGTTGGAAATGTTCGAAGACGTACGGGTTGTCGTCTTCTGCATCGCACTCAGTGATTTCGACCAAATGTGGATTTCGCCAGACGGGAGTGGGAGTGGAAACATACTTCAAAACAAGATGATGCAGAGCAAAGAGCTGTTTGAGACTATGATTCGACAACCTTGTTTCAAGGAAACACCATTTGTCTTGATCCTAAACAAATACGACATCTTCGAGGAGAAGATAAACAGGATTGCTTTAAGTTCGTGTGAATGGTTCAACGATTTTCGGCCAGCTGCTTTTAAGTATATCAGAGAGGTGGTGAAGTGGGATGAAGAGAGAGAGGAGAACTTCTATAATGGACCTGAAGATTCATTTTACAGTACAGATATCAGCTCCTCCCCAATTGTTAGATGA 1800 42.56 EMENKEGENWRKLVTNMLPPGASLPENTNLDYSIALEYRGPPVSYDVPRVEPLDVNSREIPVAEPLSESRRSIANARHPIIEPIPLPVSYIADVTNSATQSPRVSASSESVVSVLQNPDFSSASPSASYNPLNNQPNHVDNEVRRTPVVTFNTVDRSEGEKPDKIISSNLNFTGKLSPHASNGNTEVYINGREITKLELRLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVPRGQPHGVRNEASTYTTVPNYLEQKKVQKLLLIGIHGSGTSTIFKQVLLKNRCPPLDKCIAYEQTLRSVIWQAKLLYGNRFSAEELQDIKLMIQSNLYKYLSIVLDGRERFEEEVAYRMKAIKFHDQVSVGCMVALLVNCQMQSCAVEVSSNEYEPSERDIIYAEGVTQGNGLAFMEFSLDDRSPMSETYTDNLEAPPPPLTKYQLIRVNAKGMNDGCKWLEMFEDVRVVVFCIALSDFDQMWISPDGSGSGNILQNKMMQSKELFETMIRQPCFKETPFVLILNKYDIFEEKINRIALSSCEWFNDFRPAAFKYIREVVKWDEEREENFYNGPEDSFYSTDISSSPIVR 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3083173 3088383 + Bma007131.1 Bma12g00240 91666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00240 599 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 20 154 - -
Bma12g00240 599 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 561 596 - -
Bma12g00240 599 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 392 559 - -
Bma12g00240 599 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 157 370 - -
Bma12g00240 599 Pfam G-protein alpha subunit 397 558 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 551 IPR027417 -
Bma12g00240 599 PRINTS Alpha G protein (transducin) signature 476 504 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 PRINTS Alpha G protein (transducin) signature 278 293 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 PRINTS Alpha G protein (transducin) signature 529 538 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 PRINTS Alpha G protein (transducin) signature 403 425 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 SMART galpha_1 265 597 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 157 370 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 Gene3D - 431 587 IPR027417 -
Bma12g00240 599 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 20 154 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 561 596 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 392 559 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00240 599 ProSiteProfiles G-alpha domain profile. 275 599 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00240 - - - dzi:111289790 398.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00240 Bma-Chr12:3083173 Bma12g01280 Bma-Chr12:45799646 5.32E-13 dispersed
Bma12g00240 Bma-Chr12:3083173 Bma12g00482 Bma-Chr12:13972938 5.27E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00240 Bma_Chr12 FPKM 11.775354 13.13072 22.260963 24.760971 11.21788 8.920683 9.633199 37.224632 33.396854 37.88562