Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00241 AGCAGCGAACTCTTTCGTCTTCCTTTTCGATTTCTTTGTGTATCGATAACTCCAGCGACCATGGCCGCTCTGCAGTACCTTGATTCGCTTCGTAATTCTCACCCTGAGCTCTCCGATTGGTACAACACGCTCGCAGATCTGTATCAGAGGCAGCTCTGGCACCAGCTTACTCTCAAGCTTGAGCAGTTCGTGGCCCTAGCTGTCTTTCAGGCTGGGGATGCTCTCATACAATTATATCACAATTTCATCACGGACTTTGAAACTAAAATTAATCTTCTCAAGCTTGCACATTTTGCTGTCATTGTTTCTCGGCGATATTCAGAAAAAGAAGCTGCCATCAGTTATCTTGAAGGGGTAGTCGAGAAACTCAAAGCTACTAGAGAGCAGCGCATAGATGAGCCAGTTCTGTACATCAGGATGCAAATAGCCTTATTTAAGTTAGAGCAGGGGGACCAAAAGGAGTGTAAGAAACTTTTGGAAGATGGGAAGAGTGCGCTTGATAGCTTGACTGACATTGATCCATCTGTTTTTGCTAGCTATTATTGGGTTTCGTCCCAATACCACAAATTTCGCCGAGAATTTGCAGATTTCTATAAAAGTGCCCTTCTTTACCTGGCATACACTTCAGTGGAGTCTCTTTCGGATTCCTTCAAGCTGGATTTGGCGTTCGATTTGTCCCTCTCTGCTCTTCTGGGAGAAAACATCTATAACTTTGGAGAGCTTCTTGCCCATCCCATTATAACAAGCCTCTCAGGCACGAAGGTCGAATGGCTTTACTATATTCTTCAGGCTTTCAATTCTGGTGATCTGGCCCGCTATCAAGAATTATGTCAACTGCATAATGCTGCTTTAAGAGCTCAGCCGGCATTGGTCGAGAATGAGAAGAAGCTATTAGAGAAGATTAACATTCTCTGCTTGATGGAAATTATCTTCAGCCGGCCGTCTGAAGATCGGACTATTCCACTTAGTGTCATTGCGGAACGCACAAAGCTTTCCATAGAAGACGTAGAGCATCTTCTGATGAAGAGTCTTTCTGTTCATCTTATAGAGGGTATAATTGACCAAGTTGAGGGCACAGTGCATGTTTCCTGGGTTCAGCCACGAGTATTGGGAATTCTTCAGATCAAATCCCTGAGGGACCGGCTCGACAATTGGTTGGGTAAAGTACGCACTGCCTTATTATCCATTGAGGCTGAGACACCTGATCTAGTTGCAGCTTGA 1221 44.64 SSELFRLPFRFLCVSITPATMAALQYLDSLRNSHPELSDWYNTLADLYQRQLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRRYSEKEAAISYLEGVVEKLKATREQRIDEPVLYIRMQIALFKLEQGDQKECKKLLEDGKSALDSLTDIDPSVFASYYWVSSQYHKFRREFADFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGENIYNFGELLAHPIITSLSGTKVEWLYYILQAFNSGDLARYQELCQLHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGILQIKSLRDRLDNWLGKVRTALLSIEAETPDLVAA 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3107746 3117822 + Bma007132.1 Bma12g00241 91667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00241 406 SMART PINT_4 292 385 IPR000717 -
Bma12g00241 406 Pfam PCI domain 258 363 IPR000717 -
Bma12g00241 406 SUPERFAMILY Winged helix DNA-binding domain 295 368 IPR036390 -
Bma12g00241 406 ProSiteProfiles PCI domain profile. 194 367 IPR000717 -
Bma12g00241 406 PANTHER PROTEASOME COMPONENT (PCI) DOMAIN PROTEIN-RELATED 21 406 - -
Bma12g00241 406 Gene3D - 225 363 - -
Bma12g00241 406 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 292 385 - -
Bma12g00241 406 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 21 406 IPR035298 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00241 K03039 PSMD13, RPN9; 26S proteasome regulatory subunit N9 - zju:107430950 685.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01366 Bma-Chr14:25429258 Bma12g00241 Bma-Chr12:3107746 4.48E-08 transposed
Bma12g00241 Bma-Chr12:3107746 Bma05g00700 Bma-Chr5:40889894 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g757 . . . . . Bpe07g00240 . . . Cmo16g01244 . . . . . Cpe14g00991 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00241 . . . . Cma16g01197 . Car16g01127 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006085 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00241 Bma_Chr12 FPKM 11.291113 14.240284 0.705401 0.922369 14.50882 14.14423 13.426929 0.880422 0.820825 0.847127