Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00251 CGAAGGTTGGCGGCAAAAATGTTTCGATGCATAGTATGTACGCCACAAACTGCGGATGACGGCGGCGAGAAGCGGGAGGCGCGTGGAAGTACGACGCCCAGTTCAAAGGAAGCTGTCAAAAGCCTGACGACGCAGATAAAGGATATGGCATTGAAATTCTCTGGCGCTTATCGACAAGGCAAACCATGCTCAGGCCCAAGTAGTTACAGAAAAGGACAGAGACCTTACCCAGACTTCGATACCGCTTCAGAAGGGATTCCTTATCCATTCTTTGGAGGTGCAAGCTCGAGTTCGACCCCTGCGTGGGATTTCACAAGTGCTAGTTGCCACCCTGCTGCAAGATTGGATGAAGAACTTGTAACTGCTAGTGATGTTTTGCTTGATAGTGAGAATGAGCCCAAAGAATGGATGGCACAGGTGGAGCCAGGAGTGCACATTACGTTTGTGTCTCTTCCTCATGGGGGTAATGATCTTAGACGAATTCGCTTCAGCCGAGAAATGTTTAATAAATGGCAAGCTCAGAGATGGTGGGGTGAGAACTATGACCGGATAATGGAGCTCTATAATGTACAAAGATTTAATCGACAAGCTCTTCATACTCCACCAAGGTCTGAAGATGAGCTTCAGAGAGATTCATCTTACTCAATGATTGCATCTGCTCGGGAGAGTCCCATGACTTCTTCAGCACACAAGGAATGGGTGCCTAGGACCAAGAGTGGTGGCCATAACTACAACTCCGGGCTTGGTTCTTATGGTGCAGGCTGTCACAAAGGAGATGTTTCATCTTTTGAAGCATCAAGGACGACCACCTCTTCTAGAGATGAAGCTTCGGTCTCCGTCAGCAATGCCAGTGACCTAGAGGGAGAGTGGGTGGAAGAAGATGAGCCCGGAGTTTACATTACAATCAGACAGCTAGCCGATGGTACAAGAGAGCTCCGTCGTGTCAGATTTAGTCGGGAAAAGTTTGGAGAGACAAATGCCAAGCTGTGGTGGGAAGAGAATAGAGAGAGAATACAAGCTCAGTACCTTTGA 1032 48.16 RRLAAKMFRCIVCTPQTADDGGEKREARGSTTPSSKEAVKSLTTQIKDMALKFSGAYRQGKPCSGPSSYRKGQRPYPDFDTASEGIPYPFFGGASSSSTPAWDFTSASCHPAARLDEELVTASDVLLDSENEPKEWMAQVEPGVHITFVSLPHGGNDLRRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALHTPPRSEDELQRDSSYSMIASARESPMTSSAHKEWVPRTKSGGHNYNSGLGSYGAGCHKGDVSSFEASRTTTSSRDEASVSVSNASDLEGEWVEEDEPGVYITIRQLADGTRELRRVRFSREKFGETNAKLWWEENRERIQAQYL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3228306 3232260 + Bma007143.1 Bma12g00251 91677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00251 343 ProSiteProfiles BRX domain profile. 288 343 IPR013591 -
Bma12g00251 343 MobiDBLite consensus disorder prediction 16 39 - -
Bma12g00251 343 Pfam Transcription factor BRX N-terminal domain 29 63 IPR027988 -
Bma12g00251 343 PANTHER PROTEIN BREVIS RADIX-LIKE 1 7 343 IPR044532 -
Bma12g00251 343 PANTHER PROTEIN BREVIS RADIX-LIKE 1 7 343 - -
Bma12g00251 343 MobiDBLite consensus disorder prediction 58 78 - -
Bma12g00251 343 Pfam Transcription factor regulating root and shoot growth via Pin3 288 342 IPR013591 -
Bma12g00251 343 Pfam Transcription factor regulating root and shoot growth via Pin3 134 188 IPR013591 -
Bma12g00251 343 ProSiteProfiles BRX domain profile. 134 189 IPR013591 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00967 Bma12g00251 CCT
Bma12g00251 Bma14g00108 CCT
Bma05g00692 Bma12g00251 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00692 Bma-Chr5:40473448 Bma12g00251 Bma-Chr12:3228306 0 dispersed
Bma07g01011 Bma-Chr7:40408959 Bma12g00251 Bma-Chr12:3228306 1.07E-120 dispersed
Bma09g00974 Bma-Chr9:49296372 Bma12g00251 Bma-Chr12:3228306 1.41E-102 dispersed
Bma12g00251 Bma-Chr12:3228306 Bma14g00108 Bma-Chr14:1466252 4.90E-130 dispersed
Bma12g00251 Bma-Chr12:3228306 Bma05g00687 Bma-Chr5:39923367 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00251 - - zju:107434375 539.65