Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00253 | ATGAACAGAGGCCCCATTGCTAAAAATGAAGCACCCCCTAGGATTATACCTATAAGTGCTCTGAATCCTTACCAGGGTAGGTGGACGATCAAGGCTAGAGTAACGGCAAAAGGAGAACTTAGGCACTATAATAATCCTCGAGGTGATGGAAAAGTATTCTCTTTCGATCTTCTCGATTCTGATGGTGGAGAAATTCGGGCAACCTGCTTTAATGCAGTGGCTGATCAGTTTCACAGCCAGATTGAACCAGGCAAAGTATACTTTATTTCTAAGGGTACTTTAAAACCTGCTCAAAAGAATTTCAACCACCTCTCCAATGACCTAGAAATATTTATGGAGAGCTCATCTACAATACAACCATGCCTTGAGGAGGACAACTCTATTCCTCGACAGCAGTTTCATTTCCGTCCCATTAGTGATGTTGAAGGCTTGGATAACAACATAATAGTTGATGTTATTGGCGTAGTTTCCTCCATAAATCCTGCAACTTCCATAATGAGGAAAAATGGATCTGAAACTCAAAAGAGGACTCTCCAGTTGAAAGACGTGTCTGGTCGAAGTGTTGAATTGACTCTGTGGGGCGCTCTTTGCTCGACAGATGGACAAAGGCTGCAAAACCTGTGTGATTCTGGGGTATTTCCAGTTCTGGCTGTGAAATCTGCTAGAGTTAATGACTTTAATGGGAAGGCGGTGAGTACTATTTCTACAAGTCAGCTTTTCGTCGAGCCAGAATTTCCTGAGGCACATAGACTGAGAGATTGGTTTGAAAAGGAAGGGAGGAACACTCCTTCTGTGTCTATATCCAGGGAAGTGTCTGGTTTGGGTAGGACAGATGCACGCAAAACTATTTCACATATTAAAGATGAGAAGTTGGGGACTTCTGAAAAGCCAGATTGGATCACTGTCAGTGCAACTGTTTCATTCATAAAGGTTGATAACTTCTGCTACACAGCATGCCCAGTCATGATTGGGGACAGGCAGTGCAACAAAAAGGTTACCAATAATGGTGATGGGAAATGGAGGTGCGAGAGGTGCGATCAATTGGTTGCAGAATGCGACTACAGGTACATATTGCAGCTTCAAATACAGGACCATACTGGGTTAACATGGGTAACTGCATTTCAAGAAACTGGGGAGGAGATCATGGGCATATCTGCAAAGAATTTGTATTATTTGAAGTATGAAGAGCAGGATGATGAGAAATTTGCAGAAATCATTCGTAAGGTTCTCTTCACTAGTTTCATTTTTAAGTTGAAAGTGAAAGAAGAGACATATAGTGATGAACAACGGGTAAAGTCCACCGTAATAAAGGCAGACAAGGTAAACTTTTCATCAGAGTCCAGATATCTATTGGATCTGTTGAATAAACTTAGATCAGAGAGCTCAGATTCTTTTGCCACTAAGACAGAAAATAATACCAGTAACCCTGGATTTAACCCATCTGGAGTTGGTAGCTTCGGCAATTCACAGCATATCATGGCACCTCAGGTTGGAAGCTTCGGAGGTAGTGGTTATGGCATTCGGGATGTTGGTGCTAGAGCCAACCAATCCGACCAGTATGGGCACCAGTATAATATTTCTAGGGTTCATCCACCTAATTCGAACGTGTATTGCAACAGTTGTGGTGGCACAGGTCACAACTCCATGAACTGTCCAAGTATAATGAATAGTCCAGCAATGGCTCAGTCATCCGGAGGGATGTATCCGAATAGAGCTTCCATGGGAGTTTCTGGAGGCACTACTGGTGAATGTTTTAAGTGCCACCGTACTGGGCACTGGGCAAGAGATTGCCCTGGCCTGTCTTCTATTCCCCCAGCTTATGGTAGTGGTGGTGGCTATGCAGGTGTATGA | 1851 | 43.38 | MNRGPIAKNEAPPRIIPISALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRATCFNAVADQFHSQIEPGKVYFISKGTLKPAQKNFNHLSNDLEIFMESSSTIQPCLEEDNSIPRQQFHFRPISDVEGLDNNIIVDVIGVVSSINPATSIMRKNGSETQKRTLQLKDVSGRSVELTLWGALCSTDGQRLQNLCDSGVFPVLAVKSARVNDFNGKAVSTISTSQLFVEPEFPEAHRLRDWFEKEGRNTPSVSISREVSGLGRTDARKTISHIKDEKLGTSEKPDWITVSATVSFIKVDNFCYTACPVMIGDRQCNKKVTNNGDGKWRCERCDQLVAECDYRYILQLQIQDHTGLTWVTAFQETGEEIMGISAKNLYYLKYEEQDDEKFAEIIRKVLFTSFIFKLKVKEETYSDEQRVKSTVIKADKVNFSSESRYLLDLLNKLRSESSDSFATKTENNTSNPGFNPSGVGSFGNSQHIMAPQVGSFGGSGYGIRDVGARANQSDQYGHQYNISRVHPPNSNVYCNSCGGTGHNSMNCPSIMNSPAMAQSSGGMYPNRASMGVSGGTTGECFKCHRTGHWARDCPGLSSIPPAYGSGGGYAGV | 616 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3252412 | 3254262 | - | Bma007145.1 | Bma12g00253 | 91679 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00253 | 616 | CDD | RPA1_DBD_B | 149 | 256 | - | - | |
Bma12g00253 | 616 | Pfam | OB-fold nucleic acid binding domain | 28 | 110 | IPR004365 | GO:0003676 | |
Bma12g00253 | 616 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 7 | 456 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Bma12g00253 | 616 | Gene3D | - | 126 | 265 | IPR012340 | - | |
Bma12g00253 | 616 | Pfam | Zinc knuckle | 583 | 598 | IPR001878 | GO:0003676|GO:0008270 | |
Bma12g00253 | 616 | Gene3D | - | 533 | 602 | - | - | |
Bma12g00253 | 616 | SMART | c2hcfinal6 | 583 | 599 | IPR001878 | GO:0003676|GO:0008270 | |
Bma12g00253 | 616 | SMART | c2hcfinal6 | 537 | 553 | IPR001878 | GO:0003676|GO:0008270 | |
Bma12g00253 | 616 | PANTHER | REPLICATION PROTEIN A SUBUNIT | 2 | 494 | - | - | |
Bma12g00253 | 616 | SUPERFAMILY | Retrovirus zinc finger-like domains | 578 | 602 | IPR036875 | GO:0003676|GO:0008270 | |
Bma12g00253 | 616 | Gene3D | - | 14 | 123 | IPR012340 | - | |
Bma12g00253 | 616 | Pfam | Replication factor-A C terminal domain | 299 | 450 | IPR013955 | - | |
Bma12g00253 | 616 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 2 | 494 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Bma12g00253 | 616 | Gene3D | - | 266 | 457 | IPR012340 | - | |
Bma12g00253 | 616 | SUPERFAMILY | Nucleic acid-binding proteins | 133 | 262 | IPR012340 | - | |
Bma12g00253 | 616 | SUPERFAMILY | Nucleic acid-binding proteins | 14 | 127 | IPR012340 | - | |
Bma12g00253 | 616 | ProSiteProfiles | Zinc finger CCHC-type profile. | 538 | 553 | IPR001878 | GO:0003676|GO:0008270 | |
Bma12g00253 | 616 | CDD | RPA1_DBD_A | 17 | 120 | - | - | |
Bma12g00253 | 616 | SUPERFAMILY | Nucleic acid-binding proteins | 280 | 457 | IPR012340 | - | |
Bma12g00253 | 616 | Pfam | Replication protein A OB domain | 138 | 241 | IPR031657 | - | |
Bma12g00253 | 616 | ProSiteProfiles | Zinc finger CCHC-type profile. | 584 | 598 | IPR001878 | GO:0003676|GO:0008270 | |
Bma12g00253 | 616 | SUPERFAMILY | Retrovirus zinc finger-like domains | 528 | 599 | IPR036875 | GO:0003676|GO:0008270 | |
Bma12g00253 | 616 | CDD | RPA1_DBD_C | 283 | 456 | IPR013955 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00242 | Bma-Chr8:2989413 | Bma12g00253 | Bma-Chr12:3252412 | 1.54E-86 | dispersed | |
Bma12g00253 | Bma-Chr12:3252412 | Bma12g00964 | Bma-Chr12:41612761 | 5.28E-88 | dispersed | |
Bma12g00253 | Bma-Chr12:3252412 | Bma06g00893 | Bma-Chr6:43815724 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00253 | K07466 | - | zju:107431005 | 926.391 |