Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00253 ATGAACAGAGGCCCCATTGCTAAAAATGAAGCACCCCCTAGGATTATACCTATAAGTGCTCTGAATCCTTACCAGGGTAGGTGGACGATCAAGGCTAGAGTAACGGCAAAAGGAGAACTTAGGCACTATAATAATCCTCGAGGTGATGGAAAAGTATTCTCTTTCGATCTTCTCGATTCTGATGGTGGAGAAATTCGGGCAACCTGCTTTAATGCAGTGGCTGATCAGTTTCACAGCCAGATTGAACCAGGCAAAGTATACTTTATTTCTAAGGGTACTTTAAAACCTGCTCAAAAGAATTTCAACCACCTCTCCAATGACCTAGAAATATTTATGGAGAGCTCATCTACAATACAACCATGCCTTGAGGAGGACAACTCTATTCCTCGACAGCAGTTTCATTTCCGTCCCATTAGTGATGTTGAAGGCTTGGATAACAACATAATAGTTGATGTTATTGGCGTAGTTTCCTCCATAAATCCTGCAACTTCCATAATGAGGAAAAATGGATCTGAAACTCAAAAGAGGACTCTCCAGTTGAAAGACGTGTCTGGTCGAAGTGTTGAATTGACTCTGTGGGGCGCTCTTTGCTCGACAGATGGACAAAGGCTGCAAAACCTGTGTGATTCTGGGGTATTTCCAGTTCTGGCTGTGAAATCTGCTAGAGTTAATGACTTTAATGGGAAGGCGGTGAGTACTATTTCTACAAGTCAGCTTTTCGTCGAGCCAGAATTTCCTGAGGCACATAGACTGAGAGATTGGTTTGAAAAGGAAGGGAGGAACACTCCTTCTGTGTCTATATCCAGGGAAGTGTCTGGTTTGGGTAGGACAGATGCACGCAAAACTATTTCACATATTAAAGATGAGAAGTTGGGGACTTCTGAAAAGCCAGATTGGATCACTGTCAGTGCAACTGTTTCATTCATAAAGGTTGATAACTTCTGCTACACAGCATGCCCAGTCATGATTGGGGACAGGCAGTGCAACAAAAAGGTTACCAATAATGGTGATGGGAAATGGAGGTGCGAGAGGTGCGATCAATTGGTTGCAGAATGCGACTACAGGTACATATTGCAGCTTCAAATACAGGACCATACTGGGTTAACATGGGTAACTGCATTTCAAGAAACTGGGGAGGAGATCATGGGCATATCTGCAAAGAATTTGTATTATTTGAAGTATGAAGAGCAGGATGATGAGAAATTTGCAGAAATCATTCGTAAGGTTCTCTTCACTAGTTTCATTTTTAAGTTGAAAGTGAAAGAAGAGACATATAGTGATGAACAACGGGTAAAGTCCACCGTAATAAAGGCAGACAAGGTAAACTTTTCATCAGAGTCCAGATATCTATTGGATCTGTTGAATAAACTTAGATCAGAGAGCTCAGATTCTTTTGCCACTAAGACAGAAAATAATACCAGTAACCCTGGATTTAACCCATCTGGAGTTGGTAGCTTCGGCAATTCACAGCATATCATGGCACCTCAGGTTGGAAGCTTCGGAGGTAGTGGTTATGGCATTCGGGATGTTGGTGCTAGAGCCAACCAATCCGACCAGTATGGGCACCAGTATAATATTTCTAGGGTTCATCCACCTAATTCGAACGTGTATTGCAACAGTTGTGGTGGCACAGGTCACAACTCCATGAACTGTCCAAGTATAATGAATAGTCCAGCAATGGCTCAGTCATCCGGAGGGATGTATCCGAATAGAGCTTCCATGGGAGTTTCTGGAGGCACTACTGGTGAATGTTTTAAGTGCCACCGTACTGGGCACTGGGCAAGAGATTGCCCTGGCCTGTCTTCTATTCCCCCAGCTTATGGTAGTGGTGGTGGCTATGCAGGTGTATGA 1851 43.38 MNRGPIAKNEAPPRIIPISALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRATCFNAVADQFHSQIEPGKVYFISKGTLKPAQKNFNHLSNDLEIFMESSSTIQPCLEEDNSIPRQQFHFRPISDVEGLDNNIIVDVIGVVSSINPATSIMRKNGSETQKRTLQLKDVSGRSVELTLWGALCSTDGQRLQNLCDSGVFPVLAVKSARVNDFNGKAVSTISTSQLFVEPEFPEAHRLRDWFEKEGRNTPSVSISREVSGLGRTDARKTISHIKDEKLGTSEKPDWITVSATVSFIKVDNFCYTACPVMIGDRQCNKKVTNNGDGKWRCERCDQLVAECDYRYILQLQIQDHTGLTWVTAFQETGEEIMGISAKNLYYLKYEEQDDEKFAEIIRKVLFTSFIFKLKVKEETYSDEQRVKSTVIKADKVNFSSESRYLLDLLNKLRSESSDSFATKTENNTSNPGFNPSGVGSFGNSQHIMAPQVGSFGGSGYGIRDVGARANQSDQYGHQYNISRVHPPNSNVYCNSCGGTGHNSMNCPSIMNSPAMAQSSGGMYPNRASMGVSGGTTGECFKCHRTGHWARDCPGLSSIPPAYGSGGGYAGV 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3252412 3254262 - Bma007145.1 Bma12g00253 91679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00253 616 CDD RPA1_DBD_B 149 256 - -
Bma12g00253 616 Pfam OB-fold nucleic acid binding domain 28 110 IPR004365 GO:0003676
Bma12g00253 616 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 7 456 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma12g00253 616 Gene3D - 126 265 IPR012340 -
Bma12g00253 616 Pfam Zinc knuckle 583 598 IPR001878 GO:0003676|GO:0008270
Bma12g00253 616 Gene3D - 533 602 - -
Bma12g00253 616 SMART c2hcfinal6 583 599 IPR001878 GO:0003676|GO:0008270
Bma12g00253 616 SMART c2hcfinal6 537 553 IPR001878 GO:0003676|GO:0008270
Bma12g00253 616 PANTHER REPLICATION PROTEIN A SUBUNIT 2 494 - -
Bma12g00253 616 SUPERFAMILY Retrovirus zinc finger-like domains 578 602 IPR036875 GO:0003676|GO:0008270
Bma12g00253 616 Gene3D - 14 123 IPR012340 -
Bma12g00253 616 Pfam Replication factor-A C terminal domain 299 450 IPR013955 -
Bma12g00253 616 PANTHER REPLICATION FACTOR A 1, RFA1 2 494 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma12g00253 616 Gene3D - 266 457 IPR012340 -
Bma12g00253 616 SUPERFAMILY Nucleic acid-binding proteins 133 262 IPR012340 -
Bma12g00253 616 SUPERFAMILY Nucleic acid-binding proteins 14 127 IPR012340 -
Bma12g00253 616 ProSiteProfiles Zinc finger CCHC-type profile. 538 553 IPR001878 GO:0003676|GO:0008270
Bma12g00253 616 CDD RPA1_DBD_A 17 120 - -
Bma12g00253 616 SUPERFAMILY Nucleic acid-binding proteins 280 457 IPR012340 -
Bma12g00253 616 Pfam Replication protein A OB domain 138 241 IPR031657 -
Bma12g00253 616 ProSiteProfiles Zinc finger CCHC-type profile. 584 598 IPR001878 GO:0003676|GO:0008270
Bma12g00253 616 SUPERFAMILY Retrovirus zinc finger-like domains 528 599 IPR036875 GO:0003676|GO:0008270
Bma12g00253 616 CDD RPA1_DBD_C 283 456 IPR013955 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00242 Bma-Chr8:2989413 Bma12g00253 Bma-Chr12:3252412 1.54E-86 dispersed
Bma12g00253 Bma-Chr12:3252412 Bma12g00964 Bma-Chr12:41612761 5.28E-88 dispersed
Bma12g00253 Bma-Chr12:3252412 Bma06g00893 Bma-Chr6:43815724 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00253 K07466 - zju:107431005 926.391