Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00255 ATGGGAGGTAACCAAAAGAGTTACAGTGCGAATTCAAATGATTATAAGCTTCTGGAAGAGATTGGACATGGTGCCAGTGCAACGGTATACAGAACGATCTATCTTCCGCTCAATGAAGTGGTGGCTGTCAAGTGCTTAGATTTCGATCGCTGCAATAGCAATCTGGATGACATACGAAGGGAGGCTCAAACCATGAGTTTAATTGATCATCCAAATGTTGTAAGAGCATATTCCTCATTTGTGGTTGAACGGAACCTATGGGTTGTCATGCCATTTATGGCAGAGGGTTCTTGTTTGCATCTTATGAAGATAGCATATCCAGATGGATTTGAAGAGGATGCTATTGGATCTATACTAAAAGAAACTCTTAAAGCTTTGGATTACCTTCATTTCCAAGGACATATTCACCGAGATGTAAAGGCTGGAAATATACTACTCGATAACAATGGAGTGGTAAAGCTTGCTGACTTTGGTGTTTCTGCTTGCATGTTTGACACCGGTGATAGACAACGATCTAGAAATACATTTGTAGGAACTCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAAGTGGATATAATTTCAAGGCTGATATCTGGTCATTTGGTATTACAGCATTGGAGTTGGCTCATGGTCATGCACCATTTTCGAAATATCCTCCAATGAAGGTACTTCTCATGACCATTCAAAATGCTCCTCCTGGGCTAGATTATGATCGCGATAAAAAATTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAGCGAAGAGGCCGACTGCAGAAAAGCTGTTAAAACATTCCTTTTTCAAGAATATAAAGCCTTCAGAGTTTTCAGTGAAGAAATTGTTTGATGACTTGCCTCCTCTTTGGAATCGTGTAAAGGCACTCCAGCTTAAAGATGAAGCACAGCTAGCTCTAAAGAAAATGCCTTCAGCTGAACAAGAAGCACTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTCGATATTGAGGATTTAAAAGCCCAAGCTTCGTTGATGCGTGATGATGATGATGATGATTTGGCAGAGATGAGGGAACATGAAGAAATCATCAAATCATTTGTTAGTGATAAGGGCACAGCACAATCAGCTGGTGAGGAGTTGGTGCCAGTTGAATGGTTGAGCAAAAAGGGTAAGACTATGGAAAACCAGTGGCCTGAATCTGGGACCCAAGAGAAAAGTGGTCTGAAAATAATTGGGACTAGAACAGAGGCAGCAGCTTCTACTTCCGGCCAAGACATTGCTCAGGCAAAGAATAAAACCCAAATTCCAAAAATTCGGCAAACATTGAGCGGGCTCAGTCATTCATTATCAGAAAGAGCTTGTTACCCGGAGAGGTGTGAGTATGAAATTCAACCATCTGCAGAAAAAAATAATCGTGACCTCCAACAAACACCAAACTTTAGTGGTCCTTTGATGCTGCCAAATCGTGCTTCAGCAAATAGCTTATCTGCACCAATAAAGTCTTCTGGAGGATATAGAGATTCATTGGATGACAAGTCAAAGGCTAATCTCGTGCAAAAAGGGCGGTTTTCTGTAACATCAGAAAACTTGGATCTCGCTAAGGATATTCCATTAAGTACAGTTCCACGCAGATCTTCTCAGGGATCACCGCTAAGAAAATCAGCTAGCGTTGGTGATTGGACACTTGACTCAAAACAGATGCATGTCAATCAATCCCAAAAGGAGCTTTCCAACAGTAATATACCCGCAACATTTTTCATGACTCACCTGCAGACACTTTATCAGCAGACTTCAATTCAACAGGATCTTATATTCAATTTACTTAATACCCTCCAACCAACTGACGTAGTGGATGCTACTCAAAATGGAAAGTTGCCTTCATTGCCTCCAACCTCAGAGGACAATGGAACTGTTGAAATGGTGTCTCCTGAGAAAGAACGCTTACTACAATTGAGGATCTCAGAACTTCAAGCTAGGTTGATGCATTTGACATATGAGCTAAATACCGAAAAGTTAAAATACTTTCAATTGCAAGAGCAGCTGAATACAATATCCTGTCAAGAAGAAAATGGAGGTAGGAGAGAAGGTAATTTCTGA 2112 41.1 MGGNQKSYSANSNDYKLLEEIGHGASATVYRTIYLPLNEVVAVKCLDFDRCNSNLDDIRREAQTMSLIDHPNVVRAYSSFVVERNLWVVMPFMAEGSCLHLMKIAYPDGFEEDAIGSILKETLKALDYLHFQGHIHRDVKAGNILLDNNGVVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGSGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQAKRPTAEKLLKHSFFKNIKPSEFSVKKLFDDLPPLWNRVKALQLKDEAQLALKKMPSAEQEALSQSEYQRGVSAWNFDIEDLKAQASLMRDDDDDDLAEMREHEEIIKSFVSDKGTAQSAGEELVPVEWLSKKGKTMENQWPESGTQEKSGLKIIGTRTEAAASTSGQDIAQAKNKTQIPKIRQTLSGLSHSLSERACYPERCEYEIQPSAEKNNRDLQQTPNFSGPLMLPNRASANSLSAPIKSSGGYRDSLDDKSKANLVQKGRFSVTSENLDLAKDIPLSTVPRRSSQGSPLRKSASVGDWTLDSKQMHVNQSQKELSNSNIPATFFMTHLQTLYQQTSIQQDLIFNLLNTLQPTDVVDATQNGKLPSLPPTSEDNGTVEMVSPEKERLLQLRISELQARLMHLTYELNTEKLKYFQLQEQLNTISCQEENGGRREGNF 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3305310 3321469 + Bma007149.1 Bma12g00255 91681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00255 703 CDD STKc_OSR1_SPAK 13 276 - -
Bma12g00255 703 Pfam Protein kinase domain 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00255 703 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00255 703 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Bma12g00255 703 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 2 695 - -
Bma12g00255 703 Gene3D Transferase(Phosphotransferase) domain 1 96 327 - -
Bma12g00255 703 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Bma12g00255 703 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 695 - -
Bma12g00255 703 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00255 703 Coils Coil 302 322 - -
Bma12g00255 703 SUPERFAMILY Protein kinase-like (PK-like) 13 330 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00255 Bma-Chr12:3305310 Bma13g00112 Bma-Chr13:1170563 8.21E-37 dispersed
Bma01g00127 Bma-Chr1:1244103 Bma12g00255 Bma-Chr12:3305310 2.97E-55 transposed
Bma01g00975 Bma-Chr1:9607098 Bma12g00255 Bma-Chr12:3305310 2.27E-177 transposed
Bma10g00841 Bma-Chr10:15014080 Bma12g00255 Bma-Chr12:3305310 6.06E-179 transposed
Bma14g00255 Bma-Chr14:3020751 Bma12g00255 Bma-Chr12:3305310 2.76E-68 transposed
Bma12g00255 Bma-Chr12:3305310 Bma05g00683 Bma-Chr5:39699566 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66808 PF00069 Pkinase 3.90E-60 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00255 - - zju:107430085 1048.88