Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00255 ATGGGAGGTAACCAAAAGAGTTACAGTGCGAATTCAAATGATTATAAGCTTCTGGAAGAGATTGGACATGGTGCCAGTGCAACGGTATACAGAACGATCTATCTTCCGCTCAATGAAGTGGTGGCTGTCAAGTGCTTAGATTTCGATCGCTGCAATAGCAATCTGGATGACATACGAAGGGAGGCTCAAACCATGAGTTTAATTGATCATCCAAATGTTGTAAGAGCATATTCCTCATTTGTGGTTGAACGGAACCTATGGGTTGTCATGCCATTTATGGCAGAGGGTTCTTGTTTGCATCTTATGAAGATAGCATATCCAGATGGATTTGAAGAGGATGCTATTGGATCTATACTAAAAGAAACTCTTAAAGCTTTGGATTACCTTCATTTCCAAGGACATATTCACCGAGATGTAAAGGCTGGAAATATACTACTCGATAACAATGGAGTGGTAAAGCTTGCTGACTTTGGTGTTTCTGCTTGCATGTTTGACACCGGTGATAGACAACGATCTAGAAATACATTTGTAGGAACTCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAAGTGGATATAATTTCAAGGCTGATATCTGGTCATTTGGTATTACAGCATTGGAGTTGGCTCATGGTCATGCACCATTTTCGAAATATCCTCCAATGAAGGTACTTCTCATGACCATTCAAAATGCTCCTCCTGGGCTAGATTATGATCGCGATAAAAAATTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAGCGAAGAGGCCGACTGCAGAAAAGCTGTTAAAACATTCCTTTTTCAAGAATATAAAGCCTTCAGAGTTTTCAGTGAAGAAATTGTTTGATGACTTGCCTCCTCTTTGGAATCGTGTAAAGGCACTCCAGCTTAAAGATGAAGCACAGCTAGCTCTAAAGAAAATGCCTTCAGCTGAACAAGAAGCACTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTCGATATTGAGGATTTAAAAGCCCAAGCTTCGTTGATGCGTGATGATGATGATGATGATTTGGCAGAGATGAGGGAACATGAAGAAATCATCAAATCATTTGTTAGTGATAAGGGCACAGCACAATCAGCTGGTGAGGAGTTGGTGCCAGTTGAATGGTTGAGCAAAAAGGGTAAGACTATGGAAAACCAGTGGCCTGAATCTGGGACCCAAGAGAAAAGTGGTCTGAAAATAATTGGGACTAGAACAGAGGCAGCAGCTTCTACTTCCGGCCAAGACATTGCTCAGGCAAAGAATAAAACCCAAATTCCAAAAATTCGGCAAACATTGAGCGGGCTCAGTCATTCATTATCAGAAAGAGCTTGTTACCCGGAGAGGTGTGAGTATGAAATTCAACCATCTGCAGAAAAAAATAATCGTGACCTCCAACAAACACCAAACTTTAGTGGTCCTTTGATGCTGCCAAATCGTGCTTCAGCAAATAGCTTATCTGCACCAATAAAGTCTTCTGGAGGATATAGAGATTCATTGGATGACAAGTCAAAGGCTAATCTCGTGCAAAAAGGGCGGTTTTCTGTAACATCAGAAAACTTGGATCTCGCTAAGGATATTCCATTAAGTACAGTTCCACGCAGATCTTCTCAGGGATCACCGCTAAGAAAATCAGCTAGCGTTGGTGATTGGACACTTGACTCAAAACAGATGCATGTCAATCAATCCCAAAAGGAGCTTTCCAACAGTAATATACCCGCAACATTTTTCATGACTCACCTGCAGACACTTTATCAGCAGACTTCAATTCAACAGGATCTTATATTCAATTTACTTAATACCCTCCAACCAACTGACGTAGTGGATGCTACTCAAAATGGAAAGTTGCCTTCATTGCCTCCAACCTCAGAGGACAATGGAACTGTTGAAATGGTGTCTCCTGAGAAAGAACGCTTACTACAATTGAGGATCTCAGAACTTCAAGCTAGGTTGATGCATTTGACATATGAGCTAAATACCGAAAAGTTAAAATACTTTCAATTGCAAGAGCAGCTGAATACAATATCCTGTCAAGAAGAAAATGGAGGTAGGAGAGAAGGTAATTTCTGA 2112 41.1 MGGNQKSYSANSNDYKLLEEIGHGASATVYRTIYLPLNEVVAVKCLDFDRCNSNLDDIRREAQTMSLIDHPNVVRAYSSFVVERNLWVVMPFMAEGSCLHLMKIAYPDGFEEDAIGSILKETLKALDYLHFQGHIHRDVKAGNILLDNNGVVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGSGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQAKRPTAEKLLKHSFFKNIKPSEFSVKKLFDDLPPLWNRVKALQLKDEAQLALKKMPSAEQEALSQSEYQRGVSAWNFDIEDLKAQASLMRDDDDDDLAEMREHEEIIKSFVSDKGTAQSAGEELVPVEWLSKKGKTMENQWPESGTQEKSGLKIIGTRTEAAASTSGQDIAQAKNKTQIPKIRQTLSGLSHSLSERACYPERCEYEIQPSAEKNNRDLQQTPNFSGPLMLPNRASANSLSAPIKSSGGYRDSLDDKSKANLVQKGRFSVTSENLDLAKDIPLSTVPRRSSQGSPLRKSASVGDWTLDSKQMHVNQSQKELSNSNIPATFFMTHLQTLYQQTSIQQDLIFNLLNTLQPTDVVDATQNGKLPSLPPTSEDNGTVEMVSPEKERLLQLRISELQARLMHLTYELNTEKLKYFQLQEQLNTISCQEENGGRREGNF 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3305310 3321469 + Bma007149.1 Bma12g00255 91681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00255 703 CDD STKc_OSR1_SPAK 13 276 - -
Bma12g00255 703 Pfam Protein kinase domain 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00255 703 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00255 703 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Bma12g00255 703 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 2 695 - -
Bma12g00255 703 Gene3D Transferase(Phosphotransferase) domain 1 96 327 - -
Bma12g00255 703 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Bma12g00255 703 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 695 - -
Bma12g00255 703 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00255 703 Coils Coil 302 322 - -
Bma12g00255 703 SUPERFAMILY Protein kinase-like (PK-like) 13 330 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00255 - - - zju:107430085 1048.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00255 Bma-Chr12:3305310 Bma13g00112 Bma-Chr13:1170563 8.21E-37 dispersed
Bma01g00127 Bma-Chr1:1244103 Bma12g00255 Bma-Chr12:3305310 2.97E-55 transposed
Bma01g00975 Bma-Chr1:9607098 Bma12g00255 Bma-Chr12:3305310 2.27E-177 transposed
Bma10g00841 Bma-Chr10:15014080 Bma12g00255 Bma-Chr12:3305310 6.06E-179 transposed
Bma14g00255 Bma-Chr14:3020751 Bma12g00255 Bma-Chr12:3305310 2.76E-68 transposed
Bma12g00255 Bma-Chr12:3305310 Bma05g00683 Bma-Chr5:39699566 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g230 . . . . . . . . Cmo06g00592 Cmo16g01271 . . . . . Cpe14g01014 . . . . . . . . . . . . . . . Cone8ag0549 Cone12ag0550 . . Lsi07g01113 . . Cme06g02394 . . . . . . . Bma12g00255 . . . Cma06g00589 Cma16g01228 Car06g00521 Car16g01156 Cpe08g00913 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT1G53165 64.2 2.8e-190 662.1
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.3e-67 253.8
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT3G15220 67.3 3.1e-205 711.8
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 6.7e-67 252.3
Bma01g00127 . 9 792 MAP Kinase Kinase Kinase Kinase AT1G69220 55.8 2.2e-218 755.7
Bma01g00975 . 1 662 MAP Kinase Kinase Kinase Kinase AT5G14720 64.0 4.2e-239 824.3
Bma12g00255 . 5 693 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 4.4e-242 834.3
Bma05g00683 . 5 662 MAP Kinase Kinase Kinase Kinase AT4G24100 66.2 1.4e-237 819.3
Bma05g00683 . 6 662 MAP Kinase Kinase Kinase Kinase AT4G10730 67.2 1.5e-239 825.9
Bma12g00255 . 6 694 MAP Kinase Kinase Kinase Kinase AT4G10730 65.4 1.1e-237 819.7
Bma10g00841 . 4 402 MAP Kinase Kinase Kinase Kinase AT1G70430 56.9 9.2e-129 457.6
Bma12g00255 . 2 401 MAP Kinase Kinase Kinase Kinase AT1G70430 54.0 1.8e-121 433.3
Bma05g00683 . 2 350 MAP Kinase Kinase Kinase Kinase AT1G70430 60.2 4.6e-120 428.7
Bma10g00841 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 3.1e-210 728.4
Bma01g00975 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.1 5.5e-100 361.7
Bma10g00841 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.1 3.8e-85 312.4
Bma05g00683 . 14 303 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 9.2e-79 291.2
Bma12g00255 . 12 303 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 5.0e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66808 PF00069 Pkinase 3.90E-60 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00255 Bma_Chr12 FPKM 12.480062 16.091276 11.371474 13.838642 21.413977 22.215212 21.985407 19.657806 21.422625 18.921503