Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00257 ATGCTCGGCTTGTCTTATCAATCTAAGAGGGGTTACATTGGGCTTGAATATTTTGGCCGAACTGTCAGCATTAAAATACTTCCAGTTGGTATTCATATTGGTCAGCTCCAAAACGCATTGAATTTACCTAAGACTCAATCTAAAATATCTGAATTGCGAGATCGATTTAAAGGTCAAACGGTTATGCTGGGAGTTGATGACATGGACATCTTCAAAGGTATAAGTTTGAAACTTTTGGCCATGGAACAGTTGCTTTTACAGCATCCAGACAAGAGGGGTAAGGTTGTTCTTGTTCAAATCGCAAACCCAGCAAGAGGTCGAGGGAAAGATGTTCAAGAGGTTATAGCTGAAACTAATGTCACTGTCAATCGAATAAACACAACATTTAGAAGGCCAGGATATGAACCTGTAATTTTAATCAATACACCTCTTCAATTTTATGAGCGAATTGCTTATTATGCAATCGCAGAGTGTTGTCTTGTGACCGCAGTGAGGGATGGGATGAATCTTATCCCGTACGAATATATTATATGTCGACAAGGAAACGAAAAGTTAGACGAAACTCTAGGGCTAGAACCTGCAACCCAAAAGAAGAGCATGCTTGTTGTCTCTGAATTTATAGGGTGTTCTCCATCACTGAGTGGGGCTATTCGAGTCAACCCATGGAATATCGAGTCAGTTGCAGAAGCCATGGAATCTGCTTTGGGAGTTTCAGAGGCAGAAAAACAGCTACGGCATGATAAGCACTATCGTTATGTTAGTACACATGATGTTGCCTATTGGGCTCAAAGCTTTTTGCAAGATCTCGGTAGGGCATGTAGGGATCATGTAATGAGAAGGTGTTGGGGGATTGGATTTGGATTGGGATTTAGAGTAATGGCTCTTGATCCTAATTTTAGGAAGCTCTCGGTTGAACATATTGTTTCGGTTTATAAGAGGTCTAAGAATAGAGCAATCCTGCTAGATTATGATGGCACAATGTTGCAGCCTGGTTCGGTTAGCACGAGCCCAAGTGCGGAGGCTATTGAAATTTTGAACAGCTTGTGCAAAGATCCGAAGAATGTTGTGTTTCTTGTTAGTGGGAAGGATAGAAAGACTCTGACTGAATGGTTTTCGTCTTGTGAAAAGCTCGGAATCGCAGCCGAGCATGGCTACTACCTGAGGCCAAATTACACTGCAGATTGGGAAACTTGTGTTGCAGTGCCAGATTTTGGGTGGAAATTGATTGCAGAGCCAGTTATGCAATTATACACAGAAGCAACAGATGGCTCCTTCATCGAAGTGAAAGAGAGTGCTCTTGTTTGGAATTACATGCACGCCGATATCGATTTCGGGTCATGCCAGGCTAAGGAACTTTTAGATCATCTTGAAAGTGTTCTTGCCAATGAGCCTGTTACCGTCAAGAGCGGCCAACACATAGTCGAGGTCAAACCCCAGGGCGTGAACAAGGGTATTGCAGCAGACTGCCTCCTACAAACAACACGGGCAAAAGACATGGTACCCGATTTTGTTCTATGCATAGGCGACGACAAGTCAGATGAGGACATGTTTGAGGTAATAATGGGTGCCAGAGCGTCTCTTTGTCCAGATGCAGAAGTATTCGATTGTACGGTCGGCCAAAAACCGAGCAAGGCCAAGTATTACTTGGAAGACCCGACCGATATCTTGCGAATGTTAAAAGGTCTTGCCAATGCATCAGAGCAGGCTTGTCGAACTAGTCCCCCGACATCGCATAGGGTGGTGATTGCAGAGAGCAAGTAG 1761 43.73 MLGLSYQSKRGYIGLEYFGRTVSIKILPVGIHIGQLQNALNLPKTQSKISELRDRFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHPDKRGKVVLVQIANPARGRGKDVQEVIAETNVTVNRINTTFRRPGYEPVILINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDETLGLEPATQKKSMLVVSEFIGCSPSLSGAIRVNPWNIESVAEAMESALGVSEAEKQLRHDKHYRYVSTHDVAYWAQSFLQDLGRACRDHVMRRCWGIGFGLGFRVMALDPNFRKLSVEHIVSVYKRSKNRAILLDYDGTMLQPGSVSTSPSAEAIEILNSLCKDPKNVVFLVSGKDRKTLTEWFSSCEKLGIAAEHGYYLRPNYTADWETCVAVPDFGWKLIAEPVMQLYTEATDGSFIEVKESALVWNYMHADIDFGSCQAKELLDHLESVLANEPVTVKSGQHIVEVKPQGVNKGIAADCLLQTTRAKDMVPDFVLCIGDDKSDEDMFEVIMGARASLCPDAEVFDCTVGQKPSKAKYYLEDPTDILRMLKGLANASEQACRTSPPTSHRVVIAESK 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3341074 3343936 + Bma007151.2 Bma12g00257 91683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00257 586 Pfam Glycosyltransferase family 20 1 269 IPR001830 GO:0003824|GO:0005992
Bma12g00257 586 Gene3D - 446 575 IPR023214 -
Bma12g00257 586 Gene3D - 316 412 IPR023214 -
Bma12g00257 586 SUPERFAMILY HAD-like 317 563 IPR036412 -
Bma12g00257 586 TIGRFAM T6PP: trehalose-phosphatase 314 563 IPR003337 GO:0003824|GO:0005992
Bma12g00257 586 CDD HAD_TPP 318 554 - -
Bma12g00257 586 Pfam Trehalose-phosphatase 320 552 IPR003337 GO:0003824|GO:0005992
Bma12g00257 586 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 319 521 IPR006379 -
Bma12g00257 586 Gene3D Glycogen Phosphorylase B; 34 254 - -
Bma12g00257 586 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 273 - -
Bma12g00257 586 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 569 - -
Bma12g00257 586 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 569 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00708 Bma-Chr5:41135268 Bma12g00257 Bma-Chr12:3341074 0 dispersed
Bma12g00257 Bma-Chr12:3341074 Bma14g01784 Bma-Chr14:38417190 0 dispersed
Bma12g00257 Bma-Chr12:3341074 Bma12g00232 Bma-Chr12:3024284 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00257 K16055 - csv:101207192 995.727