Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00258 ATGGCTGCTCCATGCGCTGAAAATTCTGTCGAGAGCAAAAGCTCTCTATCAAAACTTGCTCCACTCGAGGCGATTCTATTCGACGTAGACGGAACATTATGTGATACCGATCCACTCCACTACTATGCTTTCCGGGAAATGCTTCAAGAGATTGGCTTCAACGGAGGAATTCCGATAGACGAAGAATTCTTCATTGAGAACGTTGCTGGCAGGCACAACACTGATATTGCAATGAGACTCTTCCCCGATGATTATGAGCGGGGATTAAAATTTGCCGATGAAAAGGAAGTCATGTTTAGAAAATTAGTTACGGAGCAAGTGAAGCCTTTGAGCGGTCTGTTGAAGTTGAAGAAATGGATCGAAGATCGTGGTTTGAAGCGGGCAGCAGTTACTAACGCTCCGAGAGCTAATGCCGAGCTAATGATCTCAACTATCGGCCTTTCGGATTTCTTCGAAGCCATTATTATAGGCGATGAATGTGAACATGCGAAGCCACATCCGGAACCCTACTTGAAGGCTCTCAAAGTACTAAATGTATCCAAAGATCACACTTTCATATTCGAGGACTCGGTGTCGGGAATAAAAGCAGGAGTTGCGGCAGGGATGCCAGTAGTTGGTATATCAACTAGAAATCCTGAGCATTTGCTGATGGAAGCAAATCCAACCTTCCTTATAAAAGATTACGAGGATCCAAAGTTATGGTCTGCTTTAGAACAGCTTGATCAACAAAGGTAA 735 44.08 MAAPCAENSVESKSSLSKLAPLEAILFDVDGTLCDTDPLHYYAFREMLQEIGFNGGIPIDEEFFIENVAGRHNTDIAMRLFPDDYERGLKFADEKEVMFRKLVTEQVKPLSGLLKLKKWIEDRGLKRAAVTNAPRANAELMISTIGLSDFFEAIIIGDECEHAKPHPEPYLKALKVLNVSKDHTFIFEDSVSGIKAGVAAGMPVVGISTRNPEHLLMEANPTFLIKDYEDPKLWSALEQLDQQR 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3347258 3349776 - Bma007152.1 Bma12g00258 91684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00258 244 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 104 207 IPR006439 -
Bma12g00258 244 CDD HAD_BPGM-like 24 207 - -
Bma12g00258 244 SUPERFAMILY HAD-like 17 239 IPR036412 -
Bma12g00258 244 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 1 243 - -
Bma12g00258 244 SFLD Haloacid Dehalogenase 22 230 - -
Bma12g00258 244 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 151 167 IPR006439 -
Bma12g00258 244 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 22 33 IPR006439 -
Bma12g00258 244 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 120 133 IPR006439 -
Bma12g00258 244 Pfam Haloacid dehalogenase-like hydrolase 25 206 IPR041492 -
Bma12g00258 244 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 1 243 - -
Bma12g00258 244 Gene3D - 23 231 IPR023214 -
Bma12g00258 244 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 22 230 - -
Bma12g00258 244 Gene3D Putative phosphatase; domain 2 37 105 IPR023198 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00258 - - - mnt:21406108 412.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00230 Bma-Chr12:3019879 Bma12g00258 Bma-Chr12:3347258 3.16E-173 dispersed
Bma12g00258 Bma-Chr12:3347258 Bma14g00873 Bma-Chr14:9865930 4.53E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g623 . . . . . . . . . . . . . . . . . Bhi11g00109 Tan01g2132 . . Hepe06g1060 . . . . . . . . . . Cone12ag0439 . . Lsi07g01232 . . Cme06g02501 . . . . . . . Bma12g00258 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00206 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00258 Bma_Chr12 FPKM 30.801361 33.142948 26.42989 26.501984 18.966322 21.407841 20.78631 28.41379 28.6786 27.693892