Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00262 GGCTGTCTATTTGCAATTTCCATTGCAAAAGAGGAAGCAACTAAATTGGGGACAGTCATTGGAATAGACCTTGGCACTACATACTCGTGTGTGGGTGTATACAAGAACGGTCATGTTGAAATTATAGCAAATGACCAAGGAAATCGTATCACTCCATCATGGGTCGCTTTCACAGAAAGTGAGAGACTTATTGGTGAGGCTGCAAAGAATCAAGCAGCCGTCAACCCAGAAAGGACCGTATTTGACGTTAAGAGACTTATTGGAAGAAAGTTTGAGGACAAGGAAGTTCAGAAAGACATGAAGCTTGTTCCATATAAGATTGTGAATAAGGATGGAAAACCTTATATTCAGGTGCAAATTAATAGTGGTGAAACCAAGGTGTTCAGCCCTGAAGAGATCAGTGCCATGATTCTGATTAAGATGAAGGAAACTGCGGAAGCATTCCTTGGGAAGAAAATCAAGGATGCTGTTGTGACAGTTCCTGCTTACTTTAATGATGCCCAGAGGCAGGCTACTAAGGATGCAGGTGTGATTGCTGGACTCAATGTTGCTAGGATCATAAATGAACCTACTGCCGCTGCAATTGCTTATGGTCTTGACAAGAAAGGTGGAGAGAAAAACATTCTCGTGTTTGACCTCGGAGGTGGAACATTCGATGTCAGTATTTTGACAATTGATAACGGCGTTTTTGAGGTTCTGGCGACTAATGGAGACACTCATTTGGGAGGTGAGGATTTTGATCAGAGAATAATGGAATACTTCATCAAGTTAATCAAGAAGAAGCATGGAAAGGACATCAGCAAGGACAACAGGGCACTTGGAAAGTTGAGAAGAGAGGCAGAGCGTGCCAAGAGAGCTTTGAGTAGTCAACACCAAGTCCGGGTGGAAATTGAATCACTTTTTGATGGTGTAGATTTCTCAGAACCATTGACGCGAGCCAGATTTGAAGAGCTGAACAATGACTTGTTCAGAAAAACCATGGGACCAGTGAAAAAGGCTATGGAAGATGCTGGGTTGGAGAAGAATCAGATCGATGAGATTGTTCTTGTTGGTGGAAGCACAAGAATTCCAAAGGTTCAACAGCTTCTCAAGGACTATTTTGATGGGAAGGAACCCAACAAGGGAGTGAATCCTGACGAGGCAGTCGCATATGGTGCTGCAGTACAAGGAAGTATCTTGAGTGGAGAGGGCGGTGAAGAAACCAAAGATATCCTTCTTCTTGATGTCGCTCCTCTCACCCTCGGAATTGAAACTGTTGGTGGGGTGATGACAAAGTTGATTCCGAGAAACACTGTCATTCCAACCAAGAAATCTCAGGTCTTCACCACTTACCAGGATCAGCAGACTACTGTGTCTATTCAGGTTTTTGAAGGAGAAAGGAGTCTTACAAAGGATTGCAGAAATCTGGGCAAATTCGATTTGCATGGAATTCCTCCAGCTCCAAGGGGAACCCCTCAAATTGAAGTCACATTCGAAGTGGATGCAAATGGTATCCTGAACGTTAAAGCTGAAGACAAAGGCACTGGAAAGTCAGAGAAGATTACAATCACCAACGACAAAGGCCGCCTGAGCCAGGAGGAGATTGAGAGAATGGTTCGAGAGGCTGAAGAGTTTGCCGAGGAAGACAAGAAGGTGAAGGAGAAGATTGATGCAAGGAACGGCCTCGAGACCTACGTCTACAACATGAAGAACCAAGTCAACGATAAAGACAAGCTTGCCGACAAGCTCGAGTCTGACGAGAAAGAAAAAGTGGAGACGGCAGTGAAGGAAGCTCTCGAGTGGCTGGACGACAATCAAAGCGCCGAGAAGGAAGATTACGAAGAGAAGCTCAAAGAGGTGGAGGCCGTGTGCAACCCCATTATCACTGCCGTTTATCAAAGGTCCGGTGGCCCCTCGTCCGGCGGATCAGCAGATGATGACGACGAATCGCACGATGAGCTTTGA 1944 45.22 GCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTESERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQKDMKLVPYKIVNKDGKPYIQVQINSGETKVFSPEEISAMILIKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLHGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNGLETYVYNMKNQVNDKDKLADKLESDEKEKVETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGPSSGGSADDDDESHDEL 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3458273 3460820 + Bma007156.1 Bma12g00262 91688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00262 647 Coils Coil 266 286 - -
Bma12g00262 647 Gene3D - 20 391 - -
Bma12g00262 647 Gene3D Actin; Chain A, domain 4 242 325 - -
Bma12g00262 647 Coils Coil 596 616 - -
Bma12g00262 647 Coils Coil 528 548 - -
Bma12g00262 647 ProSitePatterns Heat shock hsp70 proteins family signature 3. 347 361 IPR018181 -
Bma12g00262 647 Gene3D - 552 627 IPR029048 -
Bma12g00262 647 PRINTS 70kDa heat shock protein signature 484 500 - -
Bma12g00262 647 PRINTS 70kDa heat shock protein signature 156 176 - -
Bma12g00262 647 PRINTS 70kDa heat shock protein signature 46 58 - -
Bma12g00262 647 PRINTS 70kDa heat shock protein signature 344 360 - -
Bma12g00262 647 PRINTS 70kDa heat shock protein signature 18 31 - -
Bma12g00262 647 PRINTS 70kDa heat shock protein signature 376 396 - -
Bma12g00262 647 PRINTS 70kDa heat shock protein signature 403 422 - -
Bma12g00262 647 PRINTS 70kDa heat shock protein signature 68 76 - -
Bma12g00262 647 PRINTS 70kDa heat shock protein signature 216 226 - -
Bma12g00262 647 Pfam Hsp70 protein 19 626 IPR013126 GO:0005524|GO:0140662
Bma12g00262 647 PANTHER LUMINAL-BINDING PROTEIN 10 634 - -
Bma12g00262 647 ProSitePatterns Heat shock hsp70 proteins family signature 2. 210 223 IPR018181 -
Bma12g00262 647 Gene3D - 202 376 - -
Bma12g00262 647 PANTHER HEAT SHOCK PROTEIN 70KDA 10 634 IPR013126 GO:0005524|GO:0140662
Bma12g00262 647 SUPERFAMILY Actin-like ATPase domain 204 395 IPR043129 -
Bma12g00262 647 Coils Coil 562 582 - -
Bma12g00262 647 MobiDBLite consensus disorder prediction 624 647 - -
Bma12g00262 647 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 550 632 IPR029048 -
Bma12g00262 647 CDD HSPA5-like_NBD 17 391 IPR042050 -
Bma12g00262 647 ProSitePatterns Heat shock hsp70 proteins family signature 1. 22 29 IPR018181 -
Bma12g00262 647 SUPERFAMILY Actin-like ATPase domain 17 201 IPR043129 -
Bma12g00262 647 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 398 551 IPR029047 -
Bma12g00262 647 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 399 556 IPR029047 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00839 Bma-Chr5:45774111 Bma12g00262 Bma-Chr12:3458273 0 dispersed
Bma06g01034 Bma-Chr6:47156609 Bma12g00262 Bma-Chr12:3458273 0 dispersed
Bma12g00262 Bma-Chr12:3458273 Bma12g00320 Bma-Chr12:4823655 0 dispersed
Bma12g00262 Bma-Chr12:3458273 Bma10g00293 Bma-Chr10:2671676 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00262 K09490 - jre:109002071 1190.64