Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00263 ATGGCGGTTCTCAGCCTTCAAGTCGTCCATTACAAGCCTCAGAAGCTCTACTCGTACAGTCGAGGCAGCAGATATACTTCCGTGAAGACGATACGGTGTGGAGTTGCAGAGGCGTCCGGAGAGCCAGCTCCGATGGGGCAGAAGACCAAGTACAATGACGGTATTTTCGAGAGGGTTTTTATGACGCTGTTTGCTAAGAAAATGGGGAAATTTGGAAAGTCGGAGGTGAAGAAGGAATGGTGGAATTTGTACGAGTACGAGAGTTTCGTTGATGTTTCGAGAAGCGTAATGCAAGGGAGGTCGAGGATTCAGCAGCAGCAAGTCGTTCGAGAGGTTCTCTTGTCCATGCTTCCTCCAGGTGCGCCTGCTCAGTTTAGGAAACTGTTTCCACCAACAAAGTGGGCCGAGGAATTCAATGCAGCCTTGACAGTGCCGTTTTTTGGATGGTTGGTCGGACCCTCTGAGGTGGTCGAAGTGGAGGTAAACGGCTCGAAGCAAAGAAGTGGAGTTCACATCAAGAAATGCAGATACTTGGAAAATAGTGGGTGTGTGGGAATGTGCGTGAATATGTGCAAGATTCCTACCCAAGATTTCTTCACCAATGAATTTGGACTTCCATTAACAATGATCCCTATTGCAGAATTTTGTGGGAACGTTGCACTATGCAGGCACACTGAGCAGGTTGTTTTTTCTGATCGTTCTAAAGTGTCACAATATAATCGATGGACTTCCCCCTACCTCGATCACGAAGCAGAGGCTGTTCGTGAGGATAATGGTTTAAAGCTTGAAACTGCAGAGTTGGAATCCAGGTATTGCTGGAGGATTGTTGGAGTGGCACACGTTAAAGATTTTGAATGGATCAGCGATCTGAGCAAACGATCTTGGTGCGAACGACGTGCTCTTGTATTTGCAAAATCGCTTCTCAAGGAAAGAAGAAAATTTCTAGCCATCTCACAAGTACTTAGTTTTAGCCATTAA 978 46.32 MAVLSLQVVHYKPQKLYSYSRGSRYTSVKTIRCGVAEASGEPAPMGQKTKYNDGIFERVFMTLFAKKMGKFGKSEVKKEWWNLYEYESFVDVSRSVMQGRSRIQQQQVVREVLLSMLPPGAPAQFRKLFPPTKWAEEFNAALTVPFFGWLVGPSEVVEVEVNGSKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMIPIAEFCGNVALCRHTEQVVFSDRSKVSQYNRWTSPYLDHEAEAVREDNGLKLETAELESRYCWRIVGVAHVKDFEWISDLSKRSWCERRALVFAKSLLKERRKFLAISQVLSFSH 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3473160 3489788 + Bma007157.2 Bma12g00263 91689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00263 325 Gene3D - 274 325 - -
Bma12g00263 325 Gene3D - 193 273 - -
Bma12g00263 325 PANTHER BETA-CAROTENE ISOMERASE D27 4 211 IPR038938 -
Bma12g00263 325 PANTHER BNAC09G11560D PROTEIN 4 211 - -
Bma12g00263 325 Pfam Beta-carotene isomerase D27-like, C-terminal 149 211 IPR025114 GO:0005506
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00263 - - - jre:118349545 333.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00884 Bma12g00263 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00799 Bma-Chr9:46489791 Bma12g00263 Bma-Chr12:3473160 4.40E-22 transposed
Bma15g00615 Bma-Chr15:7825867 Bma12g00263 Bma-Chr12:3473160 5.98E-36 transposed
Bma12g00263 Bma-Chr12:3473160 Bma05g00679 Bma-Chr5:39494575 2.56E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g149 Blo02g01154 Blo03g00256 . . Bpe05g00700 Bpe07g00063 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0859 Cone9ag0861 . . . . . . . . . . Bma05g00884 Bma12g00263 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g641 . . . Bda08g00661 Bpe07g00258 . . Bma12g00263 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012818 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 2 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00263 Bma_Chr12 FPKM 7.696373 9.537032 3.679698 3.965132 9.885417 11.324184 9.751364 3.523505 3.541852 2.827888