Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00268 ATGGCCGTCGACTCTGTTCTTGCCTCTCCGTTTGGCCCTCCGGCGACAGAGAAGGACGCTAAGGCGCTTCAGTTCATCGAAGAAATGACTCGGAACGCCGATGCCGTCCAAGAGAGAGTGTTGGCCGAAATAATGAGTCGAAACGCCGACACTGAGTATCTTAACCGGTTCAAACTCGGCGGCTCCACCGACCGCCAAAGCTACAAATCTGAAATTCCGGTCATCACATACGAGGATCTCCAGCCCGAAATTCAACGAATAGCCAACGGAGACCGTTCAGCCATTTTATCAGCCCACCCTATCTCCGAGTTCCTTACTAGTTCCGGAACATCCGCCGGTGAGAGGAAACTGATGCCGACGATCAAGGAGGATCTGGATCGCCGTCAACTTCTTTACAGCCTTCTAATGCCTGTAATGAACCTTTACGTGCCGGGTCTGGACAAAGGCAAAGGGCTATACTTCTTGTTCGTAAAATCCGAAACAAAGACTCCGGGCGGACTCCTGGCTCGACCCGTTCTCACCAGCTACTACAAGAGCGACCACTTCAAGACCCGACCCTACGACCCGTACAATGTCTACACCAGCCCGAACGAGGCTATCCTCTGCCCCGACTCTTTCCAGAGCATGTATTCCCAGATGCTCTGTGGCCTTCTCGAAAACCGCCAAGTACTTCGAATCGGCGCCGTCTTCGCCTCCGGTCTTCTCCGTGCGATCCGGTTCCTCCAGCTCCACTGGTCCCGACTTGTCAATGATATCCGAACCGGCAGGCTGAACCCGAACATTACCGACCCGTCGATAAAGGACTGTATGAACCGAGTCCTGAAGCCGAATCCGGAGCTCGCCGATTTCATCGCCGGAGAATGCTCGAAGGAAAGCTGGGAAAGAATCATTACCAGAATCTGGCCCAACACGAAGTACGTCGACGTCATCGTCACTGGAGCAATGGCACAGTACATTCCCACGCTGGATTACTACAGCGGAGGCCTACCGCTGATTTGCACGATGTACGCTTCGTCGGAATGTTATTTCGGACTGAATCTTAATCCGATGAGCAAACCGTCGGAAGTTTCCTACACAATTATGCCAAATATGGCCTACTTCGAGTTCCTTCCTCACGAACCTAATTCTCCGGCGTTGACTCGAGACTCCCCGCCGCAACTCGTTGACCTGGTGGACGTTGAAGTCGGAAAAGAGTACGAGCTAGTCATCACCACCTACGCTGGACTTTACCGGTACAGAGTCGGCGACGTACTCAGAGTCACCGGGTTTCACAACTCGGCTCCGCAGTTCCATTTCGTGAGGAGAAAAAACGTGCTTCTAAGCATCGACTCAGACAAAACCGACGAAGCCGAGTTGCAGAAGGCGGTCGAAAACGCTTCGAAGCTTCTGAAAGAATTCAAAACCAGCGTTGTCGAGTACACTAGCTTCGCCGACGCGAAATCAATTCCGGGGCACTACGTGATTTACTGGGAGCTGCTGGTAAAAGACTCAGACCATTCACCGGACGCGGAGGTGCTGAGCCGATGCTGTTTGGAAATGGAGGAGTCTCTGAACTCCGTCTACCGGCAAGGCCGAGTAGCCGATCACTCGATCGGAGCACTGGAAATCCGGGTGGTAAAAAGCGGAACTTTCGATGAACTAATGGATTACGCGATCTCGAGAGGGGCGTCGATCAATCAGTACAAAGTCCCGCGGTGTGTGAATTTCACTCCGATTATGGAGCTTTTGGATTCGAGGGTGGTTTCGTCTCATTTCAGTCCATCTCTTCCACGCTGGACGCCGGCAAGAAAACTGTAA 1797 52.75 MAVDSVLASPFGPPATEKDAKALQFIEEMTRNADAVQERVLAEIMSRNADTEYLNRFKLGGSTDRQSYKSEIPVITYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIKEDLDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETKTPGGLLARPVLTSYYKSDHFKTRPYDPYNVYTSPNEAILCPDSFQSMYSQMLCGLLENRQVLRIGAVFASGLLRAIRFLQLHWSRLVNDIRTGRLNPNITDPSIKDCMNRVLKPNPELADFIAGECSKESWERIITRIWPNTKYVDVIVTGAMAQYIPTLDYYSGGLPLICTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEPNSPALTRDSPPQLVDLVDVEVGKEYELVITTYAGLYRYRVGDVLRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVENASKLLKEFKTSVVEYTSFADAKSIPGHYVIYWELLVKDSDHSPDAEVLSRCCLEMEESLNSVYRQGRVADHSIGALEIRVVKSGTFDELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPSLPRWTPARKL 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3533752 3535730 + Bma007162.1 Bma12g00268 91694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00268 598 Pfam GH3 auxin-responsive promoter 26 569 IPR004993 -
Bma12g00268 598 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.2-RELATED 7 596 - -
Bma12g00268 598 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 7 596 IPR004993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00268 K14487 GH3; auxin responsive GH3 gene family - tcc:18608039 1056.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00671 Bma12g00268 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00526 Bma-Chr10:6113251 Bma12g00268 Bma-Chr12:3533752 1.16E-20 dispersed
Bma12g00268 Bma-Chr12:3533752 Bma13g01007 Bma-Chr13:42342715 0 dispersed
Bma02g01223 Bma-Chr2:54268792 Bma12g00268 Bma-Chr12:3533752 0 transposed
Bma04g00903 Bma-Chr4:12207677 Bma12g00268 Bma-Chr12:3533752 1.95E-143 transposed
Bma06g01166 Bma-Chr6:48805206 Bma12g00268 Bma-Chr12:3533752 3.50E-116 transposed
Bma09g00002 Bma-Chr9:212032 Bma12g00268 Bma-Chr12:3533752 0 transposed
Bma12g00268 Bma-Chr12:3533752 Bma05g00671 Bma-Chr5:39243908 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g658 Blo02g00943 Blo03g00084 Bda06g01215 Bda08g00668 Bpe07g00263 . Bma05g00671 Bma12g00268 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1010 Cone10ag1027 . . . . . . . . . Bpe05g00487 . . . Cmo04g00495 Cmo16g00352 . . . . Cpe14g00277 Cpe01g00415 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000806 5 3 4 3 3 3 4 3 4 3 3 3 5 3 3 4 3 4 2 3 3 2 2 3 3 3 2 2 2 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00268 Bma_Chr12 FPKM 10.261896 11.226408 17.669924 18.485128 7.117754 8.971749 8.378373 18.521965 20.011297 19.323177