Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00269 ATGATTGAAGATTCATCAAATGATAGCGAAGTGGATTTTTCGAATCACCCTCAAGAACTTGGCTTATCAGATGTATCCTTTAACTGGGCTTCTTGGTGGAACGGACAGGGTGATCTACAGGAGGTTTCTCCCGATATATTGTTTAATGAGAATGAGGAACGATTTAGAATTGGTGCATATACCAGGCGTATTGGTGATGTCTTATTAAAATATATTTCTCATAATGCTTCCCCAATATGCTTCGAAAAACATTATAGAGAGTACATGATAGCTTCTTTACCCAATTTGAAAGTCTTAGATAACTTGCTCATTAGAAAGATCGACAGAGAAAGGGCTATTAGTACATATTCGCAGTACTTTGAGTATCTTCCGTACCAAAGGAGGCATAAGGAGAGTTTAGTGCGTATTATTCAGAACCGTGAAATCAAAGCAAGCCAGAACCGCGAGTGGAGTTCCAAGCAAAAGATTATTTATCCTTCGAGAAAGTCTCAAAGTTCTTATGCTAGGTCTCTTTGTGCTGCAAAAGTGGGATCTTCTACTTGGCCTTTTCTGCGTCCTCTGTCTGTTTTGAGTAATGATTTGGGAGATGGAGGCCGGAGATTTCGTCCCCGACAATTCGAGTACCATCCATCTGATCCTAGCCTTATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTAGTGAATCACGAGAATGGGAAAATCGTTAGTTATATCCCATCGATTGGAGAAATGAATAGTGTGCTTGGACTCTGTTGGCTCAAGAATCATCCCTCAAAGCTCATAGCGGGTTCAGACAATGGCTCGCTAAAATTGTACGATATCAGACACACACCATCTACATTCAGAGGCATATACAGCATAACTGGGTCAGCAAGCTTTGAGGATTTTGACCAGTTAACTTCTGTTCATGTTAATTTGACGGATGAACTGTTTCTTGCAAGTGGATATTCGAGAAATGTTGCATTATATGACATAAATACTGGGAGACTCTTGCAGGTCTTCACTGATATGCACCGGGAGCATATTAACGTTGTGAAGTTTGCAAATCATTCCCCGTCAATTTTCGTTACTTCTTCCTTTGATCGGGATGTCAAGATGTGGGATTTGAGGCAAAAACCAATCGTTTCCTGCTACACGTCTTCAAGCTCTCGGGGAAATGTAATGGCTTGTTTTTCTCCGGACGATCACTTTCTCCTCGTGTCAGCCGTTGACAATGAGGTCAGACAACTTCTGGCTGTTGATGGGAGGCTACACTTGAATTTTGATATTGCTTCCACCGGAAGCTCTCAGAATTATACTCGTTCTTACTACATGAATGGAAGAGACTATGTTATCAGCGGTACCTGTGACGAACATGTTGTTCGTGTTTGTTGCGCTCAAACTGGGAGACGTCTTCGCGATATATCTTTAGAGGGAAAGGGAAATGGGAATACCATGTTTGTGCAATCTCTGAGGGGAGATCCTTTCAGAGAGTTCAACATGAGCATCTTAGCGGCCTATGTGCGACCTAGTTCGAGGTCCGAAATCGTCAAGGTCAATTTGCTTGCATCTAATGAGCAGCCTAAGGATTATCCTAGTACTCAACATTCTAGATCATCCAACGGGAAGGGAGGTTGA 1620 42.04 MIEDSSNDSEVDFSNHPQELGLSDVSFNWASWWNGQGDLQEVSPDILFNENEERFRIGAYTRRIGDVLLKYISHNASPICFEKHYREYMIASLPNLKVLDNLLIRKIDRERAISTYSQYFEYLPYQRRHKESLVRIIQNREIKASQNREWSSKQKIIYPSRKSQSSYARSLCAAKVGSSTWPFLRPLSVLSNDLGDGGRRFRPRQFEYHPSDPSLMVFGTLDGEVVVVNHENGKIVSYIPSIGEMNSVLGLCWLKNHPSKLIAGSDNGSLKLYDIRHTPSTFRGIYSITGSASFEDFDQLTSVHVNLTDELFLASGYSRNVALYDINTGRLLQVFTDMHREHINVVKFANHSPSIFVTSSFDRDVKMWDLRQKPIVSCYTSSSSRGNVMACFSPDDHFLLVSAVDNEVRQLLAVDGRLHLNFDIASTGSSQNYTRSYYMNGRDYVISGTCDEHVVRVCCAQTGRRLRDISLEGKGNGNTMFVQSLRGDPFREFNMSILAAYVRPSSRSEIVKVNLLASNEQPKDYPSTQHSRSSNGKGG 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3559238 3562563 - Bma007164.1 Bma12g00269 91695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00269 539 Gene3D - 200 483 IPR015943 GO:0005515
Bma12g00269 539 MobiDBLite consensus disorder prediction 518 539 - -
Bma12g00269 539 SMART WD40_4 328 369 IPR001680 GO:0005515
Bma12g00269 539 SMART WD40_4 281 325 IPR001680 GO:0005515
Bma12g00269 539 SMART WD40_4 374 412 IPR001680 GO:0005515
Bma12g00269 539 SMART WD40_4 232 274 IPR001680 GO:0005515
Bma12g00269 539 SUPERFAMILY WD40 repeat-like 201 469 IPR036322 GO:0005515
Bma12g00269 539 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 371 - -
Bma12g00269 539 PANTHER BNAC09G30780D PROTEIN 2 524 IPR046377 GO:0071493|GO:0080008
Bma12g00269 539 SMART LRRcap_2 82 100 IPR003603 -
Bma12g00269 539 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 378 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00269 - - - zju:107403984 800.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00269 Bma-Chr12:3559238 Bma06g01256 Bma-Chr6:49694216 2.44E-06 dispersed
Bma12g00261 Bma-Chr12:3429913 Bma12g00269 Bma-Chr12:3559238 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g664 . . Bda06g01214 . Bpe07g00264 . . Bma12g00269 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1012 Cone10ag1029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015699 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 10
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00269 Bma_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0