Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00272 AGAGGGTTTCGGACCGGTATGGCTTTTATTTCCACCTTCTCCGGCGAAACGGTGGCGCTAATGAACAAACTGTACTCCTCCTCGTCATTTAAGCTTCCGCTTCTTTATTCTCCGGCTAACTTGCAAGTGGCGCGGAATCTGACCGTCGCCGCCTCGCCGAAGTCGGCGACCGCCGGACAGCGTGAGCTTCGAGGTATTATGAAGCCTAAGAGAGTCTCTCCCGAGATGCAGGCCGTTGTCGGTGTTCCAGAGATTTCGCGGACTCAGGCTCTCAAGCAGATTTGGTCCCACATTAAGGAGAATAATCTTCAGGATCCTGATAACAAGAAGATCATAGTCTGTGATGAAAAGCTGAAGAAAATATTCGGAGGAAAAGACCGGGTTGGTTTTCTCGAAATCGCAGGCCTTATCAGCCCTCACTTCCTTAAATGA 432 50.23 RGFRTGMAFISTFSGETVALMNKLYSSSSFKLPLLYSPANLQVARNLTVAASPKSATAGQRELRGIMKPKRVSPEMQAVVGVPEISRTQALKQIWSHIKENNLQDPDNKKIIVCDEKLKKIFGGKDRVGFLEIAGLISPHFLK 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3645338 3646626 + Bma007168.1 Bma12g00272 91698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00272 143 Pfam SWIB/MDM2 domain 69 141 IPR003121 -
Bma12g00272 143 SMART swib_2 66 143 IPR019835 -
Bma12g00272 143 CDD SWIB-MDM2_like 71 141 - -
Bma12g00272 143 ProSiteProfiles SWIB/MDM2 domain profile. 65 143 IPR003121 -
Bma12g00272 143 PANTHER PROTEIN TRI1-LIKE 9 143 - -
Bma12g00272 143 Gene3D SWIB/MDM2 domain 60 143 IPR036885 -
Bma12g00272 143 SUPERFAMILY SWIB/MDM2 domain 63 143 IPR036885 -
Bma12g00272 143 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 9 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00272 - - - twl:120001755 181.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01213 Bma-Chr6:49253161 Bma12g00272 Bma-Chr12:3645338 2.43E-27 dispersed
Bma07g01280 Bma-Chr7:48463550 Bma12g00272 Bma-Chr12:3645338 7.29E-06 dispersed
Bma12g00259 Bma-Chr12:3411004 Bma12g00272 Bma-Chr12:3645338 1.05E-66 dispersed
Bma12g00272 Bma-Chr12:3645338 Bma12g00274 Bma-Chr12:3667111 1.45E-24 dispersed
Bma12g00272 Bma-Chr12:3645338 Bma12g00273 Bma-Chr12:3653000 5.35E-67 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g668 Blo02g00939 Blo03g00081 . . Bpe07g00266 . . Bma12g00272 . Cmo11g01405 . . . . . Cpe04g00313 Cpe15g00452 . . . . . . . . . . . . . . Cone12ag1057 Cone8ag1091 . . . Csa07g00700 . Cme01g00106 . . . . . Bpe05g00483 . . . . . Cma11g01711 Cma19g00564 Car11g01130 Car19g00424 . . . . . . . . . . . . . . . . . . Chy01g00116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007982 0 1 2 2 2 1 2 1 1 1 0 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 0 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58097 PF02201 SWIB 3.30E-29 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00272 Bma_Chr12 FPKM 158.190369 164.854843 0.493411 0.666974 1.828691 1.121332 2.195253 0.0 0.0 0.0