Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00288 ATGGGTGCTCCAAAGCAGAAATGGACACAAGAAGAAGAAGCAGCCCTTAAAGCCGGAATTGTTAAGCATGGAGCCGGAAAGTGGCGAACGATACTCAAGGATCCTGAATTCAGTGGTGTCTTATACCTGCGTTCGAATGTAGATCTAAAGGATAAGTGGAGAAACATGACTGTAATGGCTAATGGATGGGGCTCCAGAGAGAAAGCGAGGTTAGCACTCAAGAAGCAACATGTTCCTCAACTAGATGAGAATTCTTTGGCTCTCAGTGTTATGGCCCAAAGCGACGAAGAAATAGTAGATGCTATGCCTTTGGTTGTTTCTTCTGATAAGCCTCACCATACTAAGCCACAGAGATCTACAGTAAGGTCAGAATTGTATTTACAATTTTTGTTTATTACCACAGTTTCTAGGTTGGACAATCTGATATTGGAGGCAATTTCTATGTTGAGGGAGCCTGGTGGTTCTAACAAGACAGCTATTGCTTCTTACATAGAGGACCAATATTGGGCGCCTCCGGACTTCAAGAGGCTGTTGTCCGCAAAACTAAAGCTTTTGACAGTTAGCGGAAAACTAAGCAAGGTACGTAAATTCAATAGGGGTATTAATGATAATGATAAGGATAAGGTTTTGACTGATTTGGCTATATTTTCCCAGGTGAAACGCAAATACAGGATTCCGTCAGCTTTAGCGATTTCTAGCAAAAGAAGCTCCTCCATGTTATTGTTGGAGGGTCGGCAGAGGCTGTCTCCAAGAGTTGATAAGGACTTAATTATTCTTACAAAAGACCAGATTGACTTAGAATTAGGTAGAATGAGGTTGATGACTGCCCACGAGGCAGCTGAGGCAGCTGCTCTGGCAGTTGCAGAGGCAGAAGCAGCCATTGCAGAAGCTGAAGAGGCAGCCAGGGAGGCCGAGGCCGCTGAAGCTGATGCTGAAGCAGCTCAGGCTTTTGCAGAAGCTGCCTTAAAAACGGTCAACGGAAGGAACCTCCCAAAGACGGTAATCTTTCTAGAATGCTTTGGCAATTTCACGCCTACTGAATGTTGGTTGAGTAATGTCTGA 1062 44.44 MGAPKQKWTQEEEAALKAGIVKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMTVMANGWGSREKARLALKKQHVPQLDENSLALSVMAQSDEEIVDAMPLVVSSDKPHHTKPQRSTVRSELYLQFLFITTVSRLDNLILEAISMLREPGGSNKTAIASYIEDQYWAPPDFKRLLSAKLKLLTVSGKLSKVRKFNRGINDNDKDKVLTDLAIFSQVKRKYRIPSALAISSKRSSSMLLLEGRQRLSPRVDKDLIILTKDQIDLELGRMRLMTAHEAAEAAALAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFAEAALKTVNGRNLPKTVIFLECFGNFTPTECWLSNV 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3843475 3845618 - Bma007186.2 Bma12g00288 91714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00288 353 Gene3D - 134 209 IPR036388 -
Bma12g00288 353 SMART h15plus2 132 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bma12g00288 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bma12g00288 353 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 134 227 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bma12g00288 353 Gene3D - 2 59 - -
Bma12g00288 353 SUPERFAMILY Winged helix DNA-binding domain 136 200 IPR036390 -
Bma12g00288 353 CDD SANT_TRF 6 57 - -
Bma12g00288 353 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Bma12g00288 353 PANTHER SINGLE MYB HISTONE 4 1 333 IPR044597 GO:0003691
Bma12g00288 353 SMART sant 4 59 IPR001005 -
Bma12g00288 353 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 333 - -
Bma12g00288 353 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bma12g00288 353 Coils Coil 280 317 - -
Bma12g00288 353 Pfam linker histone H1 and H5 family 139 195 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bma12g00288 353 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01149 Bma-Chr3:15664743 Bma12g00288 Bma-Chr12:3843475 1.31E-70 dispersed
Bma12g00288 Bma-Chr12:3843475 Bma03g01159 Bma-Chr3:15872206 3.01E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58100 PF00538 Linker_histone 3.60E-07 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00288 K09422 - csin:114320961 340.887