Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00288 ATGGGTGCTCCAAAGCAGAAATGGACACAAGAAGAAGAAGCAGCCCTTAAAGCCGGAATTGTTAAGCATGGAGCCGGAAAGTGGCGAACGATACTCAAGGATCCTGAATTCAGTGGTGTCTTATACCTGCGTTCGAATGTAGATCTAAAGGATAAGTGGAGAAACATGACTGTAATGGCTAATGGATGGGGCTCCAGAGAGAAAGCGAGGTTAGCACTCAAGAAGCAACATGTTCCTCAACTAGATGAGAATTCTTTGGCTCTCAGTGTTATGGCCCAAAGCGACGAAGAAATAGTAGATGCTATGCCTTTGGTTGTTTCTTCTGATAAGCCTCACCATACTAAGCCACAGAGATCTACAGTAAGGTCAGAATTGTATTTACAATTTTTGTTTATTACCACAGTTTCTAGGTTGGACAATCTGATATTGGAGGCAATTTCTATGTTGAGGGAGCCTGGTGGTTCTAACAAGACAGCTATTGCTTCTTACATAGAGGACCAATATTGGGCGCCTCCGGACTTCAAGAGGCTGTTGTCCGCAAAACTAAAGCTTTTGACAGTTAGCGGAAAACTAAGCAAGGTACGTAAATTCAATAGGGGTATTAATGATAATGATAAGGATAAGGTTTTGACTGATTTGGCTATATTTTCCCAGGTGAAACGCAAATACAGGATTCCGTCAGCTTTAGCGATTTCTAGCAAAAGAAGCTCCTCCATGTTATTGTTGGAGGGTCGGCAGAGGCTGTCTCCAAGAGTTGATAAGGACTTAATTATTCTTACAAAAGACCAGATTGACTTAGAATTAGGTAGAATGAGGTTGATGACTGCCCACGAGGCAGCTGAGGCAGCTGCTCTGGCAGTTGCAGAGGCAGAAGCAGCCATTGCAGAAGCTGAAGAGGCAGCCAGGGAGGCCGAGGCCGCTGAAGCTGATGCTGAAGCAGCTCAGGCTTTTGCAGAAGCTGCCTTAAAAACGGTCAACGGAAGGAACCTCCCAAAGACGGTAATCTTTCTAGAATGCTTTGGCAATTTCACGCCTACTGAATGTTGGTTGAGTAATGTCTGA 1062 44.44 MGAPKQKWTQEEEAALKAGIVKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMTVMANGWGSREKARLALKKQHVPQLDENSLALSVMAQSDEEIVDAMPLVVSSDKPHHTKPQRSTVRSELYLQFLFITTVSRLDNLILEAISMLREPGGSNKTAIASYIEDQYWAPPDFKRLLSAKLKLLTVSGKLSKVRKFNRGINDNDKDKVLTDLAIFSQVKRKYRIPSALAISSKRSSSMLLLEGRQRLSPRVDKDLIILTKDQIDLELGRMRLMTAHEAAEAAALAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFAEAALKTVNGRNLPKTVIFLECFGNFTPTECWLSNV 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3843475 3845618 - Bma007186.2 Bma12g00288 91714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00288 353 Gene3D - 134 209 IPR036388 -
Bma12g00288 353 SMART h15plus2 132 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bma12g00288 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bma12g00288 353 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 134 227 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bma12g00288 353 Gene3D - 2 59 - -
Bma12g00288 353 SUPERFAMILY Winged helix DNA-binding domain 136 200 IPR036390 -
Bma12g00288 353 CDD SANT_TRF 6 57 - -
Bma12g00288 353 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Bma12g00288 353 PANTHER SINGLE MYB HISTONE 4 1 333 IPR044597 GO:0003691
Bma12g00288 353 SMART sant 4 59 IPR001005 -
Bma12g00288 353 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 333 - -
Bma12g00288 353 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bma12g00288 353 Coils Coil 280 317 - -
Bma12g00288 353 Pfam linker histone H1 and H5 family 139 195 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bma12g00288 353 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00288 K09422 MYBP; transcription factor MYB, plant - csin:114320961 340.887
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01149 Bma-Chr3:15664743 Bma12g00288 Bma-Chr12:3843475 1.31E-70 dispersed
Bma12g00288 Bma-Chr12:3843475 Bma03g01159 Bma-Chr3:15872206 3.01E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00288 . 1 335 Single Myb Histone (SMH) Gene Family AT1G49950 59.1 1.7e-75 279.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58100 PF00538 Linker_histone 3.60E-07 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00288 Bma_Chr12 FPKM 8.878345 7.568822 25.607737 25.887901 3.875573 4.285545 3.346701 42.562229 46.613514 46.317513