Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00295 ATGCGCCGGACGGGTTTGCCTGCGCGCGATCTTCGGATTTTGGATCCTTTATTGTCGTATCCCTCAACCATTTTGGGCCGTGAGAGAGCGATTGTGATTAATCTGGAGCATATAAAAGCCATTATCACGGCTCAAGAGGTGCTTCTGTTGAACTCTAGAGACCCCTCGGTGACGCCCTTCGTTGAAGAGCTACAGAGACGGATACTGCGCCACCACCAAGCCATCAAGGCACAAGAGGGTGAGGGCGCTGATTCAAATTGGACTGATATCTATGATTTGGGAGAGGCAAGATCAAGGGCCGTAAGTCCAGAAAATTCATATCAAGGATTTCCACAGTCTCAAGAAGGAAAAGAGGAAGGAAAGGAAGGTGGGAAACAAGGTCTTGATAACCGCGATGGATTAAAGGTTCTCCCATTTGAGTTTGTTGCATTGGAAGCTTGCCTTGAATCTACTTGCAGTAACTTAGAGAGCGAAGTGATTTCAAGATTCTTAATCCTCATAGTTTATAAATTTAAATCTTCACCTGATTTAAATTTGTTTCCACTGCTAGCTTCTTGTTTTTTCTTTTTATTTTTGAATTACGCCGAAGAAAGATTAATTCATTACTTTCTTATTTGTATCAGGTTACCTTCCGAAATATCAGTAGATGGTGGTGGCATCCCGAGTAATTATGAAAGTGACATCCAGAACAATGAAGAACCTCAACACCCGCTTTTTGGTGGACCTAATGCACTTAGCCATGGAACCCATACGAGCACTACTCATAGTGCTTTAAGCAAACACCTTGATGTGGATGAGCTTGAAATGCTTTTAGAGGCATACTTTGTTCAAATCGATGGTACTTCAAACAAACTATCTACGATGCCGTTGGTGATTGATGTGTTCTCAATTGTCTTCTCATTTTCTTCCATTGGAAAGCTTCGAGAGTACGTGGACGACACAGAAGATTACATAAACATAATGTTGGACGACAAACAGAACCATCTTCTCCAAATGGGAGTTATGTTAACGACAGCAACTCTCGTGGTGAGCGCCTTTGTTGTGGTGGCTGGAATATTTGGCATGAACATACACATCGAGCTCTTCGACCCAGAACTAGCAGGTATGCCTCAATTTCTTTGGACAGTCGGTGGAAGTGCCGCAGGAAGCGTCTTCCTCTATGTGTTTGCCATTGCCTGGTGCAAATACAAACGGTTGCTTGAGTGA 1206 43.28 MRRTGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITAQEVLLLNSRDPSVTPFVEELQRRILRHHQAIKAQEGEGADSNWTDIYDLGEARSRAVSPENSYQGFPQSQEGKEEGKEGGKQGLDNRDGLKVLPFEFVALEACLESTCSNLESEVISRFLILIVYKFKSSPDLNLFPLLASCFFFLFLNYAEERLIHYFLICIRLPSEISVDGGGIPSNYESDIQNNEEPQHPLFGGPNALSHGTHTSTTHSALSKHLDVDELEMLLEAYFVQIDGTSNKLSTMPLVIDVFSIVFSFSSIGKLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFDPELAGMPQFLWTVGGSAAGSVFLYVFAIAWCKYKRLLE 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4172559 4175923 - Bma007201.1 Bma12g00295 91721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00295 401 Coils Coil 61 81 - -
Bma12g00295 401 MobiDBLite consensus disorder prediction 115 129 - -
Bma12g00295 401 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 233 401 - -
Bma12g00295 401 MobiDBLite consensus disorder prediction 99 129 - -
Bma12g00295 401 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 1 159 - -
Bma12g00295 401 CDD Mrs2_Mfm1p-like 1 399 IPR039204 -
Bma12g00295 401 Gene3D - 1 52 - -
Bma12g00295 401 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 159 IPR039204 -
Bma12g00295 401 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 233 401 IPR039204 -
Bma12g00295 401 Gene3D Magnesium transport protein CorA, transmembrane region 110 162 - -
Bma12g00295 401 Gene3D Magnesium transport protein CorA, transmembrane region 244 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00295 - - - oeu:111412426 414.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00023 Bma-Chr12:735368 Bma12g00295 Bma-Chr12:4172559 2.11E-48 dispersed
Bma12g00295 Bma-Chr12:4172559 Bma13g00660 Bma-Chr13:16386481 7.22E-59 dispersed
Bma12g00007 Bma-Chr12:267972 Bma12g00295 Bma-Chr12:4172559 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g735 . Blo03g00064 Bda06g01175 . Bpe07g00288 . . Bma12g00295 Cmo19g00556 Cmo11g01427 . . . . . Cpe04g00333 . . . . . . . . Cla02g00695 Cam02g0728 Cec02g0743 Cco02g0767 Clacu02g0739 Cmu02g0734 Cre02g1047 . Cone8ag1071 Cone3ag1040 . . Csa07g00673 . Cme01g00132 . . . . . . . . . . . Cma11g01693 Cma19g00542 Car11g01150 Car19g00399 . . . . . . . . . . . . . . . . . . Chy01g00142 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00295 Bma_Chr12 FPKM 3.854439 4.236813 0.0 0.214107 0.0 0.374333 0.0 11.315185 12.254991 9.897521