Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00304 ATGGCTGCCTTTCAGGTTCTTAAACTGCCGATTTCTCCGATATCGGTTTCGCACCCGAAGCTTCCCGGTAAACTGAGCTGGGTCTACTCGGAATCTAATTCCAGGGGCAAAATCAAGACTATACAGGGTGTTTTTCAGAGCTCGAGGTTGGGGCGTTCCTACTTTTTCAATCGGTTTAGTGTTAGCTGCGCTGCTCAAGAAAGTGATAGCCAAGCTAATGGCGAAGAAACTCCCGAGTCGTTATTCATGAAGGAACTGAAGAGAAGAGGAATGACTCCCACTTCATTGCTTGAGGATACCAACTGGAGTGAAGTTGGACTTGGCAGTGAAACGGCTGATAAGGGCAGAGGTTTCTCTAAAAGAAATTCCGTCTCGACCAAAGTCGACAAAAGCCTATCAAATCAAAGAGAGCGCTCCATGTTACTGAACAGCGAAGGCCTCGAGGGGTTAATCCCTCGAGCTAAACTTTTGCTAACTATTGGAGGAACATTTTTCTTGGGATTTTGGCCGCTGATCCTCGTTACTGTTGGAGTCTTCTCTGTGCTCTACTTTTATTTTGGTGCAACATTCATTCACGATGCGAGTAGAGTGCCGGTAGCTCCTCCCCAATACGTTGATCCCTACGTCCTTCTCGAGGACGAGAGAATTTCTCAAATAGCGGCCCCTCATACTAATTGA 678 46.76 MAAFQVLKLPISPISVSHPKLPGKLSWVYSESNSRGKIKTIQGVFQSSRLGRSYFFNRFSVSCAAQESDSQANGEETPESLFMKELKRRGMTPTSLLEDTNWSEVGLGSETADKGRGFSKRNSVSTKVDKSLSNQRERSMLLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLILVTVGVFSVLYFYFGATFIHDASRVPVAPPQYVDPYVLLEDERISQIAAPHTN 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4279837 4281761 - Bma007210.1 Bma12g00304 91730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00304 225 PANTHER F2J10.10 PROTEIN 42 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00304 - - - mnt:21386895 275.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00304 Bma-Chr12:4279837 Bma05g00643 Bma-Chr5:37790981 1.58E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g772 Blo02g00916 Blo03g00059 . Bda08g00688 Bpe07g00294 . . Bma12g00304 . . . . . . . . . . . . . . . . Cla10g00960 Cam10g0983 Cec10g1014 Cco10g0978 Clacu10g1005 Cmu10g1788 Cre10g1161 . . Cone3ag1048 Cone10ag1064 . . . . . . . . . . . . . Cmo04g00461 Cmo16g00323 . . . . Cpe14g00252 Cpe01g00387 Bhi11g01101 Tan01g0604 . . . Mch10g0407 . . . . . . . . Lsi03g01005 . . Cme07g02212
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005582 1 2 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00304 Bma_Chr12 FPKM 24.487978 26.307533 23.155905 20.505138 12.76222 14.018373 16.164343 22.179049 22.083048 22.642403