Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00305 ATGAACCCTGTCCCTGTTTTCAGAAACTCTGAAACCGGCAACCCCGTCCGGAGGAGTTTCGCTGGAAACCCATTTGTGAAGCCTTCGATAATTGCGAGTTCGAGGGGTTTAAATCCTAAAACTCCTGCAAACTCTCCACTAGATTATCAGCGTCGCAGCTCTACAGGCAGCAGAGATTTTGACGAAAAAGAAAACGGAAAAGATCATATTCCCAAACCTGCAAAAGTTCGATCACCAACAATACCAGACGGCGCGAAGAACTTCATGTCTCCGACTATCTCAGCTTCTTCCAAGATCGCAATGTCTCCAAAGAAGAAGATTCTGGTCGAGAAGAACGAGCCAGTTCGAACTTCTCTCTCGCTTTCCGACTTGAAAAGCTCGTCTATCAACTCGGTGAATCCCCATGAAGCAATTCAACCAACAAGTCTTAATCAGAAACCTACTGATTCGAATAACGATTTCAGTTCTGCAGATGCTTCCTCCGATTTGATGGACCTCCTACCAGCTTTGCGAGCTTCATCTTCAACACCTAAACTTTCGAAAACTGTGACTTTCATTGATTGTGTGACAAAACATTCTGGATCCTTGTCAAAGTTTGAGAATGCCGACGCAGTTGATCTTGCTGACAGATTTAAGATTAGTCCTACTCCGCCGTATCCGAGTCCATCACCATGTCCAACTTTAGCACCTCTCGATGCCGATCCATCTATGCCACCATATGATCCGAAAACCAATTACTTGTCGCCAAGGCCTCAGTTTCTTTTTTACAGACCGAACCGTCGAAAGGAGCGGTATCTTCACAAGGAAGAAGGCGGGAGAAGTGTTGAGGGAAGCTTTCTTTCCGAGAGCTTCTCCGATACTGAGGTAACAGAGGAGACTCAGTCAGAGAGCTTTGAGAATTTAGATGAAGTTTCTTCTGATGAATTTGTTGAAAAAGTAAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAACAGAGTCTATCGGAACCATCACACCTCGTCGGAAAAGATACAATAGACGAGAATTCTGAAGCCAAAGGGAATTCCAAGTCCTTCAACATATACAAGCTCACTGCCCTTATTTTGCTTCTCTGTTTTGGTTGCTCGTCTGTCCTATATACGACTCCCCTGGTAAAGAACAATTACCCATCTGAAGCCAACCAATTCGCAAAATTAAGATATCCCGAGTTGGCTAAAAATTTCTGGGTTCTGTCTAAAAATGTTGTTGCTTACGCTCATGGCGTGATTTTGAATTTGGTAGAAGAGCGCGGATTAATTCATCCAGTGCAGTACTTTAACTTGACTGCTTTGCGAGAGGATACATCCGTTGATGGGTATTTTGTGTTTGATCAGAGTCACGGACGAATAGATGGTTTTCTGTCAGAGCCAACGTGGGAGATTGCGGTAGAATTTGAGTCATTAGAAGAAGAAAATGAGCTGCTGCAGAAACATGTCGAGTTGGAAGAAGAAGCTGAAGAAGAGTATTCTGAATTCATGGAGGACCCTGAACCAAGCTTTGAGGAACAAGAACACCATGAGAGTGAACTCCATGAAGGATTGGAAGAACTTTCCGGCGAAAAATGTGCACCAGAATCTGAAGTGGTCGAAATGAACAATAATTCAGAAGTTAAGGATGAAAAGCTACCTTTAAAACCAGTTAGAGTTGAGGAAGCAGAAGAAGAGAGCTTTGAACTCCCTGTGGAAGAGCCTTCAGGAGAAAATGGTGCAGTTGAAATGAATCATAATTCAGAAGTTAAGGATGAAAGGCTACCTTTAAAACCAGTGGGAGTTGAGGAAGCAGAAGAAGAGAGCTCTGAACTTGATGTTAACACTATGATGATGCATCAGAAAGCTTTGAAAGTTCAGCAATGGCCGCTTTGTCAAATGTGA 1899 42.97 MNPVPVFRNSETGNPVRRSFAGNPFVKPSIIASSRGLNPKTPANSPLDYQRRSSTGSRDFDEKENGKDHIPKPAKVRSPTIPDGAKNFMSPTISASSKIAMSPKKKILVEKNEPVRTSLSLSDLKSSSINSVNPHEAIQPTSLNQKPTDSNNDFSSADASSDLMDLLPALRASSSTPKLSKTVTFIDCVTKHSGSLSKFENADAVDLADRFKISPTPPYPSPSPCPTLAPLDADPSMPPYDPKTNYLSPRPQFLFYRPNRRKERYLHKEEGGRSVEGSFLSESFSDTEVTEETQSESFENLDEVSSDEFVEKVKQEEEEEEEEEEEKQSLSEPSHLVGKDTIDENSEAKGNSKSFNIYKLTALILLLCFGCSSVLYTTPLVKNNYPSEANQFAKLRYPELAKNFWVLSKNVVAYAHGVILNLVEERGLIHPVQYFNLTALREDTSVDGYFVFDQSHGRIDGFLSEPTWEIAVEFESLEEENELLQKHVELEEEAEEEYSEFMEDPEPSFEEQEHHESELHEGLEELSGEKCAPESEVVEMNNNSEVKDEKLPLKPVRVEEAEEESFELPVEEPSGENGAVEMNHNSEVKDERLPLKPVGVEEAEEESSELDVNTMMMHQKALKVQQWPLCQM 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4319675 4321834 - Bma007211.5 Bma12g00305 91731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00305 632 Coils Coil 306 333 - -
Bma12g00305 632 PANTHER TRANSMEMBRANE PROTEIN 5 619 - -
Bma12g00305 632 PANTHER TRANSMEMBRANE PROTEIN 5 619 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 119 159 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 492 527 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 54 74 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 583 603 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 493 507 - -
Bma12g00305 632 Coils Coil 474 504 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 555 609 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 1 90 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 313 327 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 508 527 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 1 17 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 34 53 - -
Bma12g00305 632 MobiDBLite consensus disorder prediction 265 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00305 - - - qlo:115969365 304.679
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g776 Blo02g00915 . . . . . . Bma12g00305 . . . . . . . . . . . . . . . . Cla10g00958 Cam10g0981 Cec10g1012 . Clacu10g1003 Cmu10g1786 Cre10g1159 . . Cone3ag1049 Cone10ag1065 . . . . . . . . . . . . Sed13g0417 Cmo04g00459 Cmo16g00320 . . . . Cpe14g00250 Cpe01g00385 Bhi11g01098 Tan01g0601 Cmetu07g1160 . Hepe07g0391 Mch10g0405 . . . . . . . . Lsi03g01003 . . Cme07g02214
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005958 3 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00305 Bma_Chr12 FPKM 10.419595 10.275991 18.128376 19.019016 26.859526 26.051336 28.473278 14.018351 13.419083 15.288063