Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00306 ATGTCTCTCGTTCTGTTAGCGCCCTTCCCTCGCGTAGCGTTTCGCCTCCGCCGTTTTTTCAAAACCCACCTTCCGAAATCTTATTCCATTACTCAAACGACTCATTTCTCTGTCTCTGCTTCCGTTAGTCCTCAACCCACCTACCCAATTCCTCCCTCTTCTTCTTCTTCTTCTTCTGTTGAAACTCTAATTCCTAGCCCGAAGCTTGCTGGCCATCTTCAGGACTCTCTTCAGTGGGTCAGTCGTACTGGGTTATGCGGAGAATTGTCTATTGACGATGTTGGTAAACGAGTTCGACTCTGTGGATGGGTGGCTCTTCATAGGGTCCATGGTGGTCTCACCTTTCTCAATCTTAGAGACCATACTGGTATTGTTCAGGTGACTACGCTTCCTGATGAGTTTCCAGACGCCCATTCCACCGTTAATGACTTGAGGCTTGAGTATGTGGTTGCTGTGGAAGGGATTGTCCGGTCTAGGCCGAGTGAATCGATTAATAAAAAGATGAAAACTGGCTTGATAGAGGTTGCTGCAGAGAATGTTCAAGTTTTGAATGCTGTAAGATTAAAGTTGCCATTCTTAGTTACGACGGGGGATGATGCAAAAGATTCTGCTAAAGAAGAAATACGTTTGAGATACCGATACCTTGATCTGCGGAGGCAGCAAATGAATGCTAACTTAATGTTGCGGCATAAAGTGGTGAAGCTCATTCGAAGATTTTTGGAGGATATTCATGATTTTGTAGAGATTGAGACTCCAATACTTTCTAGATCTACTCCGGAAGGTGCCCGAGATTATTTGGTACCGTCTAGAGTCCAGCCAGGAACTTTCTATGCGTTACCGCAAAGTCCGCAGCTGTTTAAGCAAATGCTTATGGTTTCTGGTTTTGACAAATACTATCAAATAGCAAGATGTTTTCGAGATGAGGACTTAAGAGCAGATCGACAACCTGAATTTACACAGCTTGATATTGAATTAGCATTCCCCACATTGGAGAACATGCTGAATCTTAATGAAGAATTAATTAGAAAGGTTTTTTGGGAAATTAAAGGAGTTCAGCTGCCAAATCCTTTCCCAAGGCTTACCTATGCCGAAGCCACGAGTCGATATGGTTCAGATAGACCAGATACAAGATTTTCCCTCGAGTTGCGAGATGTGTCTGATTTCTTCGTCGACTCCAGCTTCCGGGTTTTTGCAGATGCTCTAAAAGGCGGAGGAATTATCAAAGCGCTCTGTGTGCCATCGGGTGCTAAAATTTATTCAAACTCTGCTCTTAAAAAAGGGGATATTTACAACGAAGCGATGAAATCAGGAGCAAAAGGGTTGCCCTTCCTCAAAGTCTTAGATGATGGTGAGGTCGAAGGTATTCCAGCACTCGTGTCAACCTTGGGTCCTTCGGATAAGGGGATGTTTTTGAGACGATGTTGTGCTGGGCCGGGAGATATTATCTTATTTGCTGTAGGCTCTCGTGCTGCTGTAAATAGAACCCTCGATCGTCTAAGAATATTTGTTGCTCATCAGCTCGGTTTGGTGGATCAGTCGAAACATTCGATTCTGTGGGTGACCGATTTCCCGATGTTTGAGTGGAATGAGTCAGAGCAGAGGCTTGAGGCCTTGCATCATCCTTTCACTGCTCCAAACCCAGAAGACATGAATGATCTTTCTTCTGCCCGAGCCCTCGCATACGACATTGTCTACAATGGAGTGGAGATCGGTGGGGGAAGCTTGAGAATTTACAAACGCGATATTCAACAGAAAGTTTTGGAGATTGTGGGCATCTCTCCCGAACAGGCCGAAGCGAAGTTCGGATACCTTTTGGAGGCATTAGACATGGGTGCTCCTCCTCACGGGGGGATTGCTTATGGATTGGATAGATTAGTCATGTTATTGGCCGGAGCCAATTCAATAAGAGACGTCATAGCTTTTCCGAAAACAACCACTGCCCAGTGTGCTCTTACGAGAGCTCCGTCGGAGGTGGATTCTCTGCAGCTCAAGGAATTATCGTATTTCGATAAATAG 2016 45.09 MSLVLLAPFPRVAFRLRRFFKTHLPKSYSITQTTHFSVSASVSPQPTYPIPPSSSSSSSVETLIPSPKLAGHLQDSLQWVSRTGLCGELSIDDVGKRVRLCGWVALHRVHGGLTFLNLRDHTGIVQVTTLPDEFPDAHSTVNDLRLEYVVAVEGIVRSRPSESINKKMKTGLIEVAAENVQVLNAVRLKLPFLVTTGDDAKDSAKEEIRLRYRYLDLRRQQMNANLMLRHKVVKLIRRFLEDIHDFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDIELAFPTLENMLNLNEELIRKVFWEIKGVQLPNPFPRLTYAEATSRYGSDRPDTRFSLELRDVSDFFVDSSFRVFADALKGGGIIKALCVPSGAKIYSNSALKKGDIYNEAMKSGAKGLPFLKVLDDGEVEGIPALVSTLGPSDKGMFLRRCCAGPGDIILFAVGSRAAVNRTLDRLRIFVAHQLGLVDQSKHSILWVTDFPMFEWNESEQRLEALHHPFTAPNPEDMNDLSSARALAYDIVYNGVEIGGGSLRIYKRDIQQKVLEIVGISPEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRAPSEVDSLQLKELSYFDK 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4323954 4328889 + Bma007212.1 Bma12g00306 91732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00306 671 TIGRFAM aspS_bact: aspartate--tRNA ligase 82 667 IPR004524 GO:0005524|GO:0016874
Bma12g00306 671 Pfam GAD domain 397 496 IPR029351 -
Bma12g00306 671 SUPERFAMILY Nucleic acid-binding proteins 82 184 IPR012340 -
Bma12g00306 671 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 81 671 IPR004524 GO:0005524|GO:0016874
Bma12g00306 671 Gene3D Bira Bifunctional Protein; Domain 2 201 667 IPR045864 -
Bma12g00306 671 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 61 668 - -
Bma12g00306 671 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 61 668 IPR004524 GO:0005524|GO:0016874
Bma12g00306 671 SUPERFAMILY Class II aaRS and biotin synthetases 206 644 IPR045864 -
Bma12g00306 671 Gene3D - 74 186 IPR012340 -
Bma12g00306 671 Gene3D - 361 510 IPR004115 GO:0004812|GO:0005524|GO:0005737
Bma12g00306 671 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 226 642 IPR006195 -
Bma12g00306 671 SUPERFAMILY GAD domain-like 378 510 IPR004115 GO:0004812|GO:0005524|GO:0005737
Bma12g00306 671 Pfam tRNA synthetases class II (D, K and N) 206 645 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma12g00306 671 PRINTS Aspartyl-tRNA synthetase signature 561 577 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma12g00306 671 PRINTS Aspartyl-tRNA synthetase signature 605 619 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma12g00306 671 PRINTS Aspartyl-tRNA synthetase signature 279 291 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma12g00306 671 PRINTS Aspartyl-tRNA synthetase signature 296 309 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma12g00306 671 CDD EcAspRS_like_N 82 222 - -
Bma12g00306 671 CDD AspRS_core 226 645 - -
Bma12g00306 671 Pfam OB-fold nucleic acid binding domain 98 182 IPR004365 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00306 K01876 DARS2, aspS; aspartyl-tRNA synthetase [EC:6.1.1.12] - vvi:100241273 1028.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00342 Bma-Chr11:3358997 Bma12g00306 Bma-Chr12:4323954 2.54E-07 dispersed
Bma12g00306 Bma-Chr12:4323954 Bma01g00381 Bma-Chr1:3130870 5.10E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00306 Bma_Chr12 FPKM 8.1939 8.917714 0.730278 0.762474 28.020878 31.515833 31.281343 0.0 0.608119 0.685389