Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00308 ATGGAACTCACTAGGAAGGATCTTATGCATTTGGAGCGCGAGAAGAATTCATCACCCTTAGAACGAACGCTTCTTGTTTGTAATAATGGATTGATATCTAAGAAACCTCAACAGTCAAAGGAAAAGCCAGTTACCACTTCAGTTCCCAAAAGCCAAGTTCTTGGAAGAATTAAAGATTTCTTAGGAGTCATCTCTGAAGCTAATGAAAGGCTGCAACTTGACGCAAAGGACGACTCTGAGAAATTTGATATTGAAGTCCTCTCTGGAAATGGATCAGAAGTAATTGAAATGGATTTGATGCTGGGTGTTGCTGATCTTCACACTCCAGAAGCGGTGGCTGCTGCTCAATCTGCAGTAGCTGGTTATCAGCCTGTTATTCCATTAGCTGCTAATGATTGTGGATCAGGCTCAGAAGACAGCAGTGATGAAGATAGCTCGGATGAAGATCCCAATGATGATGATGATGATGATGATAAGAACAACACTCGGAAAGATAATCATGTAAACAAATTCTCCCCCTTGATCCTCAAAAGATCCAAGTCTGTCAATGGAGGTTCGTCAGATAAAAATGCCAAGTCGCAGAAGCGGGCAAAAATTATTGAGCTGTCATGA 612 41.5 MELTRKDLMHLEREKNSSPLERTLLVCNNGLISKKPQQSKEKPVTTSVPKSQVLGRIKDFLGVISEANERLQLDAKDDSEKFDIEVLSGNGSEVIEMDLMLGVADLHTPEAVAAAQSAVAGYQPVIPLAANDCGSGSEDSSDEDSSDEDPNDDDDDDDKNNTRKDNHVNKFSPLILKRSKSVNGGSSDKNAKSQKRAKIIELS 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4342597 4343951 + Bma007215.1 Bma12g00308 91734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00308 203 MobiDBLite consensus disorder prediction 137 156 - -
Bma12g00308 203 MobiDBLite consensus disorder prediction 130 203 - -
Bma12g00308 203 Pfam NOP protein chaperone 1 54 168 IPR027921 GO:0000492
Bma12g00308 203 PANTHER SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSED 4 203 IPR027921 GO:0000492
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00308 - - - vvi:100259936 184.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00441 Bma-Chr10:4904690 Bma12g00308 Bma-Chr12:4342597 2.64E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g789 . . . . Bpe07g00297 . . Bma12g00308 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1027 Cone8ag1061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010681 0 2 0 2 1 1 1 0 1 1 1 0 0 1 1 1 0 2 1 1 1 1 1 1 2 1 1 3 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00308 Bma_Chr12 FPKM 7.16885 10.137362 20.556417 23.419548 66.434906 54.95121 65.582924 28.480738 29.984755 28.559261