Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00310 ATGTACAAGATGGCTAAATTTTCTTTAGTCTTTGCTCTTGTTTTCTTAACTCATCTTGCTCTTGCCCAAAACTCTCCTCAAGACTACATCAATGCCCACAACACAGCTCGCTCAGATGTCGGAGTCGGAGCAATCACTTGGGACAACAACTTAGCAACCTGGGCGCAAAACTACATCAACACGCTCAGGTCCAGTTGCCAAATGGTCCACTCTGGCGGGCCCTACGGCGAGAACCTTGCGTGGAGCTCTGGCGACATGTCTGGCACCAGTGCGGTCGGCCTCTGGGTGGCCGAGAAACCCTTTTACGACTACAACTCCAACTCTTGCATTGGTGGAGAGTGCCTACACTACACTCAAGTGGTGTGGCGAAACTCTATAAGGCTCGGTTGTGCTAAGGTCAGGTGCAACAGTGGAGGCACTATCATCTCTTGCAACTATGATCCACCGGGTAATTTTATTGGCCAGAGACCATACTAA 477 50.1 MYKMAKFSLVFALVFLTHLALAQNSPQDYINAHNTARSDVGVGAITWDNNLATWAQNYINTLRSSCQMVHSGGPYGENLAWSSGDMSGTSAVGLWVAEKPFYDYNSNSCIGGECLHYTQVVWRNSIRLGCAKVRCNSGGTIISCNYDPPGNFIGQRPY 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4402042 4402518 - Bma007218.1 Bma12g00310 91736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00310 158 CDD CAP_PR-1 26 158 - -
Bma12g00310 158 Pfam Cysteine-rich secretory protein family 31 146 IPR014044 -
Bma12g00310 158 SMART SCP_3 24 154 IPR014044 -
Bma12g00310 158 Gene3D CAP 23 158 IPR035940 -
Bma12g00310 158 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 9 158 IPR001283 -
Bma12g00310 158 PRINTS Allergen V5/Tpx-1 family signature 114 130 IPR001283 -
Bma12g00310 158 PRINTS Allergen V5/Tpx-1 family signature 141 154 IPR001283 -
Bma12g00310 158 PRINTS Allergen V5/Tpx-1 family signature 45 63 IPR001283 -
Bma12g00310 158 PRINTS Allergen V5/Tpx-1 family signature 91 104 IPR001283 -
Bma12g00310 158 SUPERFAMILY PR-1-like 9 158 IPR035940 -
Bma12g00310 158 ProSitePatterns CRISP family signature 2. 141 152 IPR018244 GO:0005576
Bma12g00310 158 PANTHER PATHOGENESIS-RELATED PROTEIN 1 9 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00310 K13449 PR1; pathogenesis-related protein 1 - qsu:112036655 249.595
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00636 Bma12g00310 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00310 Bma-Chr12:4402042 Bma12g00314 Bma-Chr12:4541972 1.10E-55 dispersed
Bma12g00310 Bma-Chr12:4402042 Bma12g00311 Bma-Chr12:4416014 5.25E-106 tandem
Bma10g00442 Bma-Chr10:4909894 Bma12g00310 Bma-Chr12:4402042 1.65E-104 transposed
Bma12g00310 Bma-Chr12:4402042 Bma05g00634 Bma-Chr5:37289685 4.31E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00310 Bma_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0