Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00312 ATGTGGGTGGCAAAGCTTCTCCTGGCCACAGCCATTCTTTCTCTAGCTACAATCCAAGCCACCTCTCCACAAAACTACCGTCAAGACTTTGTCGACGCCCACAATGTGGCTCGAGCCCAGGTTGGAGTTGGTCCAATCTTCTGGAATGAGGCGGTAGCCGCCTACGCTAGACGATATGCTCAGTCCAGATTCTTCGACTGCAACTTGGAGCATTCCGGGGGGCCTTACGGCGAGAACATCGCCGAGGGGTACGACGAGATGTCTGGAGGAGACGCTGTGAGATTTTGGGTGACGGAAAAGGCGAATTACGACTACTTTTCGAACTCGTGTGTGGGCGACGAGTGCCTCCACTACACGCAAGTCGTGTGGCGGAATTCAGTATATCTCGGATGTGCCAGTATCAAGTGTTACAACGGGTGGGTTTTCGTCACTTGTAACTATTATCCACCCGGGAATTACATCGGTGAACGTCCTTACTAA 480 52.29 MWVAKLLLATAILSLATIQATSPQNYRQDFVDAHNVARAQVGVGPIFWNEAVAAYARRYAQSRFFDCNLEHSGGPYGENIAEGYDEMSGGDAVRFWVTEKANYDYFSNSCVGDECLHYTQVVWRNSVYLGCASIKCYNGWVFVTCNYYPPGNYIGERPY 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4478672 4479151 - Bma007221.1 Bma12g00312 91738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00312 159 Pfam Cysteine-rich secretory protein family 31 147 IPR014044 -
Bma12g00312 159 Gene3D CAP 24 159 IPR035940 -
Bma12g00312 159 SUPERFAMILY PR-1-like 24 159 IPR035940 -
Bma12g00312 159 PANTHER PATHOGENESIS-RELATED PROTEIN 1 18 159 - -
Bma12g00312 159 CDD CAP_PR-1 28 159 - -
Bma12g00312 159 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 18 159 IPR001283 -
Bma12g00312 159 PRINTS Allergen V5/Tpx-1 family signature 92 105 IPR001283 -
Bma12g00312 159 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
Bma12g00312 159 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Bma12g00312 159 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Bma12g00312 159 ProSitePatterns CRISP family signature 2. 142 153 IPR018244 GO:0005576
Bma12g00312 159 SMART SCP_3 25 155 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00312 K13449 PR1; pathogenesis-related protein 1 - zju:107427106 229.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00312 Bma-Chr12:4478672 Bma12g00314 Bma-Chr12:4541972 1.16E-110 dispersed
Bma12g00311 Bma-Chr12:4416014 Bma12g00312 Bma-Chr12:4478672 1.05E-47 tandem
Bma12g00312 Bma-Chr12:4478672 Bma12g00313 Bma-Chr12:4533284 3.22E-31 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00312 Bma_Chr12 FPKM 12.736966 15.766499 21.534391 21.085474 34.144173 35.126736 34.36198 20.207954 18.728754 18.780951