Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00320 ATGGCCGCCGCTGCTTTACTTCGTTCCGTAAGACGTCGTGATTTAGCGTCCACCTCTCTCCTCACTTATCGATCCTTGACTGGAAATACAAAAACGTCGTTTAGTTCTCATCTTAGTCTAAAATGGTCTACCTTGGCCAGATCATTCAGTTCAAAGCCTGCGGGTAGTGATGTGGTCGGGATTGATTTGGGTACCACCAATTCTTGTGTTGCTGTGATGGAGGGAAAAAACCCTAAAGTTATTGAGAATTCAGAAGGGGCTCGTACCACACCATCAGTAGTTGCTTTTAACCAGAAAGGAGAATTACTCGTGGGAACTCCAGCAAAGCGACAAGCTGTCACCAATCCCACTAATACAATTTTTGGTACCAAACGTCTGATTGGGAGACGCTTTGATGATGCTCAGACCCAAAAGGAAATGAAAATGGTTCCTTACAAGATAGTGAAGGCTCCCAATGGAGATGCTTGGGTTGAGGCAAATGGACAGCAATATTCAGCAAGCCAAATTGGCGCTTTTGTTCTTACTAAAATGAAAGAAACTGCCGAGGCTTACCTAGGAAAGTCAGTTTCAAAAGCTGTGATTACTGTTCCTGCTTATTTTAACGATGCTCAGAGGCAAGCAACAAAGGATGCTGGCAGAATCGCTGGTCTTGATGTACTGAGAATCATCAATGAACCTACTGCTGCTGCACTTTCTTATGGAATGAACAATAAAGAGGGTCTCATAGCTGTTTTTGATCTTGGAGGTGGAACATTTGATGTTTCAATCTTGGAGATTTCTAATGGGGTTTTTGAGGTAGTGAAAGCGACGAATGGGGATACTTTCTTGGGAGGGGAAGATTTTGACAATGCCTTGTTAGATTTCTTGGTGAGTGAGTTCAAGAGAACTGAATCAATTGATCTATCAAAAGACAAGCTGGCACTACAGAGGCTTAGGGAAGCTGCTGAAAAGGCAAAAATTGAGCTCTCATCAACATCACAAACCGAAATCAATTTACCATTCATCACAGCTGATGCATCTGGTGCAAAACATTTAAATATCACACTTACTAGATCAAAGTTTGAAAGCCTAGTTAATCAACTGATCGAAAGAACCAGGGCTCCGTGTAAGAACTGCTTGAAGGATGCCAACATATCTATTAAAGATGTGGATGAAGTACTTCTTGTTGGAGGTATGACCCGTGTCCCCAAGGTGCAAGAAGTAGTTTCCGAGATATTTGGAAAGAGCCCCAGTAAGGGAGTGAATCCTGATGAGGCAGTCGCATTAGGAGCAGCAATTCAGGGTGGTATTCTGCGTGGTGATGTCAAAGAGCTGCTTCTTCTGGATGTTACCCCATTATCTCTTGGTATAGAAACACTTGGTGGTATTTTCACCAGGTTGATTAATAGGAATACTACCATCCCAACTAAGAAGAGCCAGGTGTTCTCAACTGCTGCTGACAATCAAACCCAAGTTGGTATTAAAGTACTGCAAGGAGAACGTGAAATGGCAGCGGATAACAAGATCTTGGGAGAATTTGAGCTTGTTGGTATTCCTCCTTCCCCAAGAGGAATTCCGCAGATTGAAGTCACATTTGACATTGATGCTAATGGCATAGTGACTGTCTCGGCCAAGGACAAGGCCACTTCAAAAGAACAACAAATCACTATCCGATCCTCCGGAGGTCTATCAGAAGACGAGATTGAGAAGATGGTCAAGGAAGCTGAGTTACACTCACAGAGGGACCAAGAAAGAAAAACTCTGATTGATGTCAGAAACAACGCAGACACCACCATCTACAGCATAGAAAAAAGCTTAAGTGAATATAAAGACAAAATCCCGGGCGAGGTTGCGAAGGAGATTGAGGATGCAGTGGCAGAATTGAGAAAGGCAATAGGTGGAGACAATGTGGAGGAGATAAAATCGAAACTTGACATTGCGAACAAGGCTGTGTCTAAGATTGGCCAGCACATGGCCGGTGGTGCAGGTGGATCTTCGGATGGAGGTGCTCAGGCTGGTGGGGAGCAGCAGGCGCCTGAAGCTGATTATGAGGAGGTGAAGAAATGA 2046 43.99 MAAAALLRSVRRRDLASTSLLTYRSLTGNTKTSFSSHLSLKWSTLARSFSSKPAGSDVVGIDLGTTNSCVAVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTIFGTKRLIGRRFDDAQTQKEMKMVPYKIVKAPNGDAWVEANGQQYSASQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVVKATNGDTFLGGEDFDNALLDFLVSEFKRTESIDLSKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVNQLIERTRAPCKNCLKDANISIKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKILGEFELVGIPPSPRGIPQIEVTFDIDANGIVTVSAKDKATSKEQQITIRSSGGLSEDEIEKMVKEAELHSQRDQERKTLIDVRNNADTTIYSIEKSLSEYKDKIPGEVAKEIEDAVAELRKAIGGDNVEEIKSKLDIANKAVSKIGQHMAGGAGGSSDGGAQAGGEQQAPEADYEEVKK 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4823655 4827035 - Bma007234.1 Bma12g00320 91746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00320 681 Gene3D - 556 653 IPR029048 -
Bma12g00320 681 CDD HSPA9-like_NBD 55 431 - -
Bma12g00320 681 Hamap Chaperone protein DnaK [dnaK]. 55 679 IPR012725 GO:0005524|GO:0006457|GO:0051082
Bma12g00320 681 Gene3D - 59 428 - -
Bma12g00320 681 ProSitePatterns Heat shock hsp70 proteins family signature 3. 386 400 IPR018181 -
Bma12g00320 681 MobiDBLite consensus disorder prediction 649 681 - -
Bma12g00320 681 Coils Coil 301 328 - -
Bma12g00320 681 TIGRFAM prok_dnaK: chaperone protein DnaK 58 651 IPR012725 GO:0005524|GO:0006457|GO:0051082
Bma12g00320 681 Gene3D - 234 415 - -
Bma12g00320 681 Pfam Hsp70 protein 58 651 IPR013126 GO:0005524|GO:0140662
Bma12g00320 681 ProSitePatterns Heat shock hsp70 proteins family signature 1. 61 68 IPR018181 -
Bma12g00320 681 SUPERFAMILY Actin-like ATPase domain 58 238 IPR043129 -
Bma12g00320 681 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 431 555 IPR029047 -
Bma12g00320 681 PRINTS 70kDa heat shock protein signature 383 399 - -
Bma12g00320 681 PRINTS 70kDa heat shock protein signature 437 456 - -
Bma12g00320 681 PRINTS 70kDa heat shock protein signature 85 97 - -
Bma12g00320 681 PRINTS 70kDa heat shock protein signature 518 534 - -
Bma12g00320 681 PRINTS 70kDa heat shock protein signature 192 212 - -
Bma12g00320 681 PRINTS 70kDa heat shock protein signature 250 260 - -
Bma12g00320 681 PRINTS 70kDa heat shock protein signature 57 70 - -
Bma12g00320 681 PRINTS 70kDa heat shock protein signature 414 434 - -
Bma12g00320 681 PRINTS 70kDa heat shock protein signature 108 116 - -
Bma12g00320 681 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 37 664 - -
Bma12g00320 681 Gene3D Actin; Chain A, domain 4 278 365 - -
Bma12g00320 681 PANTHER HEAT SHOCK PROTEIN 70KDA 37 664 IPR013126 GO:0005524|GO:0140662
Bma12g00320 681 SUPERFAMILY Actin-like ATPase domain 239 431 IPR043129 -
Bma12g00320 681 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 433 589 IPR029047 -
Bma12g00320 681 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 583 657 IPR029048 -
Bma12g00320 681 ProSitePatterns Heat shock hsp70 proteins family signature 2. 244 257 IPR018181 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00565 Bma-Chr5:32833904 Bma12g00320 Bma-Chr12:4823655 0 dispersed
Bma12g00262 Bma-Chr12:3458273 Bma12g00320 Bma-Chr12:4823655 0 dispersed
Bma12g00320 Bma-Chr12:4823655 Bma12g00396 Bma-Chr12:8327182 0 dispersed
Bma12g00320 Bma-Chr12:4823655 Bma05g00580 Bma-Chr5:33712572 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00320 K04043 - csv:101216102 1163.29