Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00328 ATGAATATATGGATCCAGAAATTGAAATGGGTAATGGACCCGAAGAGGTTTTCCTATTCAGAATTGGCTAGAGCGACCCATAATTTCAGTGTCTCTGAAAAGCTCGGACAAGGAGGATTTGGTGAAGTTTATAAAGGCTTTTTAGCAGACTTAAACACATATGTCGCCGTGAAGAGAGTGTCAAAGGGCTCTAGACAGGGCATTAAGGAGTATGCATCGGAAATTCGAGTCATTAGCCGGTTGAGGCATCGGAATTTAGTGCAGCTAATCGGATGGTGCCACGAAAAGAAAGAACTTCTGCTGGTCTATGAATTGATGTCAAATGCAAGCTTGGATACCCATCTTTTCAAAGAAAACTCCTTATTGACTTGGGGAATTAGATACAAAATAGCTCAAGGAATCGCCTCAGCTTTGCTTTATCTCCACGAGGAGTGGGAGCAATGTGTAGTTCATCGAGACATAAAATCGAGCAATGTCATGTTAGATTCGAGCTTCAACGCAAAACTCGGAGATTTCGGGTTGGCTCGGCTGGTCGACCATGAAAAAGGGTCTCAAACCACGGTCCTAGCCGGCACATTTGGCTACATGGCCCCCGAATGTGCGACAACCGGCAGAGCAAGTAAAGAGTCTGATGTTTTCAGTTTCGGAATCGTAGCTTTAGAAATCGCTTGTGGTAGAAAACCCATCAACCCAAAAGCCAACCTCGATGAAATAGTGATGGTCGAGTGGGTGTGGAAGCTCTATGGCGACGGAAACATTCTAGAAGCTTCTGACCCAAAACTTTCCGGAGACTTCGACTCGAGGCAGATGGAATGCTTGATGGTTGTTGGACTGTGGTGTGCTCATCCAGACATCAATTACAGGCCTGCAATCAGACAGGCAATTCAGGTTCTTAATTTTGAGGCTCCACTTCCTTCTCTTCCACTCAAAATGCCTGTGCCTACTTATCTCTCTCCTCCTCCAAAACAATTGTCCTCTTTTTCACTCACTGCAACTGACACTGAAGTTGAAAATGGCAAAGCCCAGTATCCCAATTATAGTTATTCTACCAATTCTTCAGAGGCTACTACCTCAAGCTCAGCTGCTTACCATTCTCCAACTGCTGCGCTTTTGCATGCTTGCTAA 1125 44.89 MNIWIQKLKWVMDPKRFSYSELARATHNFSVSEKLGQGGFGEVYKGFLADLNTYVAVKRVSKGSRQGIKEYASEIRVISRLRHRNLVQLIGWCHEKKELLLVYELMSNASLDTHLFKENSLLTWGIRYKIAQGIASALLYLHEEWEQCVVHRDIKSSNVMLDSSFNAKLGDFGLARLVDHEKGSQTTVLAGTFGYMAPECATTGRASKESDVFSFGIVALEIACGRKPINPKANLDEIVMVEWVWKLYGDGNILEASDPKLSGDFDSRQMECLMVVGLWCAHPDINYRPAIRQAIQVLNFEAPLPSLPLKMPVPTYLSPPPKQLSSFSLTATDTEVENGKAQYPNYSYSTNSSEATTSSSAAYHSPTAALLHAC 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5269475 5337954 + Bma007246.1 Bma12g00328 91754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00328 374 SMART serkin_6 29 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00328 374 ProSiteProfiles Protein kinase domain profile. 29 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00328 374 SUPERFAMILY Protein kinase-like (PK-like) 11 325 IPR011009 -
Bma12g00328 374 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Bma12g00328 374 Pfam Protein kinase domain 30 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00328 374 CDD STKc_IRAK 35 299 - -
Bma12g00328 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Bma12g00328 374 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Bma12g00328 374 PANTHER - 11 358 - -
Bma12g00328 374 PANTHER RECEPTOR LECTIN KINASE 11 358 - -
Bma12g00328 374 Gene3D Transferase(Phosphotransferase) domain 1 106 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01193 Bma-Chr3:17878308 Bma12g00328 Bma-Chr12:5269475 1.13E-171 dispersed
Bma12g00328 Bma-Chr12:5269475 Bma04g01639 Bma-Chr4:52305099 1.03E-103 dispersed
Bma12g00328 Bma-Chr12:5269475 Bma01g01856 Bma-Chr1:68080562 4.36E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66810 PF00069 Pkinase 9.90E-51 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00328 - - cit:102627018 513.072