Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00332 ATGAGACAAGAAATGCCGGAATCTAATCGCCAAGTTTCGTTGTTCGGGTCATCTAGACCTATGAATAATAACGAAGATAACAACTGTACGTTACAATCCCATGATGAGGACGAAGACGACGATGTGACGGGAGGAGAAGAATCCATAGACGATCCTCAGTTACGCTTCGAGGGTGGTGGCGGTGTAGACGGCTCTGTCACAGTGTTTTCTGGCGCTCAAAATACTGCTCCTTGTAGTACTGTTTACGGTCCTGCTTCGGATTATCACCCAGCTGCCGGAAATGGCAGCTCTGACCAGCTGACGCTTTCCTTTCAAGGCGAAGTTTATGTGTTTGATGCTGTTTCGCCTGATAAGGTGCAAGCCGTGCTTTTACTTTTGGGTGGATATGAAATTCCCTCTGGTATTCCTGCTGTGGGATCTGCCCCTCTTAGTCAGCGGGTTACAAGTGACTTTCCCGTAAGGTCAATTCAACCACAGAGAGCTGCTTCGTTAAGTCGATTTCGAGAGAAAAGAAAAGAGAGGTGTTTCGATAAGAAAATACGTTATAATGTGCGTAAAGAAGTAGCACTCAGGATGCAGCGTAACAAAGGCCAGTTTGCATCATCTAAAGCTAGTTCTGATGAAGCCGGCTCGGCTTCTTCAATGTGGAGCCCGGGACAGGGTGTTGGACAAGATGAGAACATGCAGGAAACTTTATGCACCCACTGTGGAATCAGTTCAAAGTTTACTCCAATGATGCGACGGGGTCCATCTGGCCCTAGAACTTTATGCAATGCTTGCGGGCTCAAGTGGGCAAATAAGGGAGTTCTAAGAGATCTTTCTAAAGTTCCGAAGACCAATAGCCAGGACCCTTCTCTTAAAGATCCAGAGCAGAGTGATGGTGAAGTGGCTAATGATTTGGATGGTGAGACGACCAACCCCAGTATTGTCCCTTCCTCAAATGGTGAAAGCTCCGCGATGAATGCAGAACGGTGA 975 47.18 MRQEMPESNRQVSLFGSSRPMNNNEDNNCTLQSHDEDEDDDVTGGEESIDDPQLRFEGGGGVDGSVTVFSGAQNTAPCSTVYGPASDYHPAAGNGSSDQLTLSFQGEVYVFDAVSPDKVQAVLLLLGGYEIPSGIPAVGSAPLSQRVTSDFPVRSIQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRNKGQFASSKASSDEAGSASSMWSPGQGVGQDENMQETLCTHCGISSKFTPMMRRGPSGPRTLCNACGLKWANKGVLRDLSKVPKTNSQDPSLKDPEQSDGEVANDLDGETTNPSIVPSSNGESSAMNAER 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5430937 5441719 - Bma007250.1 Bma12g00332 91758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00332 324 Pfam tify domain 96 127 IPR010399 -
Bma12g00332 324 Gene3D - 223 285 IPR013088 GO:0006355|GO:0008270
Bma12g00332 324 PANTHER GATA TRANSCRIPTION FACTOR 18 21 300 - -
Bma12g00332 324 Pfam CCT motif 160 202 IPR010402 GO:0005515
Bma12g00332 324 MobiDBLite consensus disorder prediction 298 324 - -
Bma12g00332 324 ProSiteProfiles GATA-type zinc finger domain profile. 227 283 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 ProSitePatterns GATA-type zinc finger domain. 233 260 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 MobiDBLite consensus disorder prediction 32 47 - -
Bma12g00332 324 MobiDBLite consensus disorder prediction 196 225 - -
Bma12g00332 324 CDD ZnF_GATA 233 278 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 ProSiteProfiles CCT domain profile. 160 202 IPR010402 GO:0005515
Bma12g00332 324 ProSiteProfiles Tify domain profile. 93 128 IPR010399 -
Bma12g00332 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 280 - -
Bma12g00332 324 SMART tify_2 93 128 IPR010399 -
Bma12g00332 324 MobiDBLite consensus disorder prediction 273 324 - -
Bma12g00332 324 Pfam GATA zinc finger 233 269 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 PANTHER GATA TRANSCRIPTION FACTOR 28 21 300 IPR045280 GO:0006355
Bma12g00332 324 MobiDBLite consensus disorder prediction 1 54 - -
Bma12g00332 324 SMART GATA_3 227 285 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00332 - - - jre:108983906 426.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02579 Bma-Chr1:83419158 Bma12g00332 Bma-Chr12:5430937 4.18E-60 dispersed
Bma02g00116 Bma-Chr2:1077281 Bma12g00332 Bma-Chr12:5430937 3.15E-71 dispersed
Bma04g00427 Bma-Chr4:3442149 Bma12g00332 Bma-Chr12:5430937 3.90E-60 dispersed
Bma12g00332 Bma-Chr12:5430937 Bma03g00101 Bma-Chr3:830343 1.66E-09 dispersed
Bma12g00332 Bma-Chr12:5430937 Bma12g00341 Bma-Chr12:5656612 8.08E-09 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g00427 BCT 3109 3325 Tify Gene Family AT4G24470 54.1 1.5e-50 196.8
Bma12g00332 . 93 300 Tify Gene Family AT1G51600 58.6 2.5e-58 222.6
Bma02g00116 . 25 241 Tify Gene Family AT1G51600 53.5 3.5e-52 202.2
Bma01g02579 BCT 68 246 Tify Gene Family AT1G51600 60.8 4.4e-47 185.3
Bma04g00427 BCT 3136 3310 Tify Gene Family AT1G51600 55.1 1.2e-39 160.6
Bma04g00427 BCT 3109 3325 Tify Gene Family AT4G24470 54.1 1.5e-50 196.8
Bma12g00332 . 93 300 Tify Gene Family AT1G51600 58.6 2.5e-58 222.6
Bma02g00116 . 25 241 Tify Gene Family AT1G51600 53.5 3.5e-52 202.2
Bma01g02579 BCT 68 246 Tify Gene Family AT1G51600 60.8 4.4e-47 185.3
Bma04g00427 BCT 3136 3310 Tify Gene Family AT1G51600 55.1 1.2e-39 160.6
Bma05g01092 CCT 1 184 Tify Gene Family AT4G14720 52.8 7.2e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58101 PF06203 CCT 2.00E-16 CL0281 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00332 Bma_Chr12 FPKM 0.0 0.0 1.743264 1.693642 0.0 0.0 0.0 0.0 0.0 0.0