Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00332 | ATGAGACAAGAAATGCCGGAATCTAATCGCCAAGTTTCGTTGTTCGGGTCATCTAGACCTATGAATAATAACGAAGATAACAACTGTACGTTACAATCCCATGATGAGGACGAAGACGACGATGTGACGGGAGGAGAAGAATCCATAGACGATCCTCAGTTACGCTTCGAGGGTGGTGGCGGTGTAGACGGCTCTGTCACAGTGTTTTCTGGCGCTCAAAATACTGCTCCTTGTAGTACTGTTTACGGTCCTGCTTCGGATTATCACCCAGCTGCCGGAAATGGCAGCTCTGACCAGCTGACGCTTTCCTTTCAAGGCGAAGTTTATGTGTTTGATGCTGTTTCGCCTGATAAGGTGCAAGCCGTGCTTTTACTTTTGGGTGGATATGAAATTCCCTCTGGTATTCCTGCTGTGGGATCTGCCCCTCTTAGTCAGCGGGTTACAAGTGACTTTCCCGTAAGGTCAATTCAACCACAGAGAGCTGCTTCGTTAAGTCGATTTCGAGAGAAAAGAAAAGAGAGGTGTTTCGATAAGAAAATACGTTATAATGTGCGTAAAGAAGTAGCACTCAGGATGCAGCGTAACAAAGGCCAGTTTGCATCATCTAAAGCTAGTTCTGATGAAGCCGGCTCGGCTTCTTCAATGTGGAGCCCGGGACAGGGTGTTGGACAAGATGAGAACATGCAGGAAACTTTATGCACCCACTGTGGAATCAGTTCAAAGTTTACTCCAATGATGCGACGGGGTCCATCTGGCCCTAGAACTTTATGCAATGCTTGCGGGCTCAAGTGGGCAAATAAGGGAGTTCTAAGAGATCTTTCTAAAGTTCCGAAGACCAATAGCCAGGACCCTTCTCTTAAAGATCCAGAGCAGAGTGATGGTGAAGTGGCTAATGATTTGGATGGTGAGACGACCAACCCCAGTATTGTCCCTTCCTCAAATGGTGAAAGCTCCGCGATGAATGCAGAACGGTGA | 975 | 47.18 | MRQEMPESNRQVSLFGSSRPMNNNEDNNCTLQSHDEDEDDDVTGGEESIDDPQLRFEGGGGVDGSVTVFSGAQNTAPCSTVYGPASDYHPAAGNGSSDQLTLSFQGEVYVFDAVSPDKVQAVLLLLGGYEIPSGIPAVGSAPLSQRVTSDFPVRSIQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRNKGQFASSKASSDEAGSASSMWSPGQGVGQDENMQETLCTHCGISSKFTPMMRRGPSGPRTLCNACGLKWANKGVLRDLSKVPKTNSQDPSLKDPEQSDGEVANDLDGETTNPSIVPSSNGESSAMNAER | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5430937 | 5441719 | - | Bma007250.1 | Bma12g00332 | 91758 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00332 | 324 | Pfam | tify domain | 96 | 127 | IPR010399 | - | |
Bma12g00332 | 324 | Gene3D | - | 223 | 285 | IPR013088 | GO:0006355|GO:0008270 | |
Bma12g00332 | 324 | PANTHER | GATA TRANSCRIPTION FACTOR 18 | 21 | 300 | - | - | |
Bma12g00332 | 324 | Pfam | CCT motif | 160 | 202 | IPR010402 | GO:0005515 | |
Bma12g00332 | 324 | MobiDBLite | consensus disorder prediction | 298 | 324 | - | - | |
Bma12g00332 | 324 | ProSiteProfiles | GATA-type zinc finger domain profile. | 227 | 283 | IPR000679 | GO:0006355|GO:0043565 | |
Bma12g00332 | 324 | ProSitePatterns | GATA-type zinc finger domain. | 233 | 260 | IPR000679 | GO:0006355|GO:0043565 | |
Bma12g00332 | 324 | MobiDBLite | consensus disorder prediction | 32 | 47 | - | - | |
Bma12g00332 | 324 | MobiDBLite | consensus disorder prediction | 196 | 225 | - | - | |
Bma12g00332 | 324 | CDD | ZnF_GATA | 233 | 278 | IPR000679 | GO:0006355|GO:0043565 | |
Bma12g00332 | 324 | ProSiteProfiles | CCT domain profile. | 160 | 202 | IPR010402 | GO:0005515 | |
Bma12g00332 | 324 | ProSiteProfiles | Tify domain profile. | 93 | 128 | IPR010399 | - | |
Bma12g00332 | 324 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 230 | 280 | - | - | |
Bma12g00332 | 324 | SMART | tify_2 | 93 | 128 | IPR010399 | - | |
Bma12g00332 | 324 | MobiDBLite | consensus disorder prediction | 273 | 324 | - | - | |
Bma12g00332 | 324 | Pfam | GATA zinc finger | 233 | 269 | IPR000679 | GO:0006355|GO:0043565 | |
Bma12g00332 | 324 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 21 | 300 | IPR045280 | GO:0006355 | |
Bma12g00332 | 324 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Bma12g00332 | 324 | SMART | GATA_3 | 227 | 285 | IPR000679 | GO:0006355|GO:0043565 | |
Bma12g00332 | 324 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02579 | Bma-Chr1:83419158 | Bma12g00332 | Bma-Chr12:5430937 | 4.18E-60 | dispersed | |
Bma02g00116 | Bma-Chr2:1077281 | Bma12g00332 | Bma-Chr12:5430937 | 3.15E-71 | dispersed | |
Bma04g00427 | Bma-Chr4:3442149 | Bma12g00332 | Bma-Chr12:5430937 | 3.90E-60 | dispersed | |
Bma12g00332 | Bma-Chr12:5430937 | Bma03g00101 | Bma-Chr3:830343 | 1.66E-09 | dispersed | |
Bma12g00332 | Bma-Chr12:5430937 | Bma12g00341 | Bma-Chr12:5656612 | 8.08E-09 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58101 | PF06203 | CCT | 2.00E-16 | CL0281 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00332 | - | - | jre:108983906 | 426.787 |