Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00332 ATGAGACAAGAAATGCCGGAATCTAATCGCCAAGTTTCGTTGTTCGGGTCATCTAGACCTATGAATAATAACGAAGATAACAACTGTACGTTACAATCCCATGATGAGGACGAAGACGACGATGTGACGGGAGGAGAAGAATCCATAGACGATCCTCAGTTACGCTTCGAGGGTGGTGGCGGTGTAGACGGCTCTGTCACAGTGTTTTCTGGCGCTCAAAATACTGCTCCTTGTAGTACTGTTTACGGTCCTGCTTCGGATTATCACCCAGCTGCCGGAAATGGCAGCTCTGACCAGCTGACGCTTTCCTTTCAAGGCGAAGTTTATGTGTTTGATGCTGTTTCGCCTGATAAGGTGCAAGCCGTGCTTTTACTTTTGGGTGGATATGAAATTCCCTCTGGTATTCCTGCTGTGGGATCTGCCCCTCTTAGTCAGCGGGTTACAAGTGACTTTCCCGTAAGGTCAATTCAACCACAGAGAGCTGCTTCGTTAAGTCGATTTCGAGAGAAAAGAAAAGAGAGGTGTTTCGATAAGAAAATACGTTATAATGTGCGTAAAGAAGTAGCACTCAGGATGCAGCGTAACAAAGGCCAGTTTGCATCATCTAAAGCTAGTTCTGATGAAGCCGGCTCGGCTTCTTCAATGTGGAGCCCGGGACAGGGTGTTGGACAAGATGAGAACATGCAGGAAACTTTATGCACCCACTGTGGAATCAGTTCAAAGTTTACTCCAATGATGCGACGGGGTCCATCTGGCCCTAGAACTTTATGCAATGCTTGCGGGCTCAAGTGGGCAAATAAGGGAGTTCTAAGAGATCTTTCTAAAGTTCCGAAGACCAATAGCCAGGACCCTTCTCTTAAAGATCCAGAGCAGAGTGATGGTGAAGTGGCTAATGATTTGGATGGTGAGACGACCAACCCCAGTATTGTCCCTTCCTCAAATGGTGAAAGCTCCGCGATGAATGCAGAACGGTGA 975 47.18 MRQEMPESNRQVSLFGSSRPMNNNEDNNCTLQSHDEDEDDDVTGGEESIDDPQLRFEGGGGVDGSVTVFSGAQNTAPCSTVYGPASDYHPAAGNGSSDQLTLSFQGEVYVFDAVSPDKVQAVLLLLGGYEIPSGIPAVGSAPLSQRVTSDFPVRSIQPQRAASLSRFREKRKERCFDKKIRYNVRKEVALRMQRNKGQFASSKASSDEAGSASSMWSPGQGVGQDENMQETLCTHCGISSKFTPMMRRGPSGPRTLCNACGLKWANKGVLRDLSKVPKTNSQDPSLKDPEQSDGEVANDLDGETTNPSIVPSSNGESSAMNAER 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5430937 5441719 - Bma007250.1 Bma12g00332 91758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00332 324 Pfam tify domain 96 127 IPR010399 -
Bma12g00332 324 Gene3D - 223 285 IPR013088 GO:0006355|GO:0008270
Bma12g00332 324 PANTHER GATA TRANSCRIPTION FACTOR 18 21 300 - -
Bma12g00332 324 Pfam CCT motif 160 202 IPR010402 GO:0005515
Bma12g00332 324 MobiDBLite consensus disorder prediction 298 324 - -
Bma12g00332 324 ProSiteProfiles GATA-type zinc finger domain profile. 227 283 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 ProSitePatterns GATA-type zinc finger domain. 233 260 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 MobiDBLite consensus disorder prediction 32 47 - -
Bma12g00332 324 MobiDBLite consensus disorder prediction 196 225 - -
Bma12g00332 324 CDD ZnF_GATA 233 278 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 ProSiteProfiles CCT domain profile. 160 202 IPR010402 GO:0005515
Bma12g00332 324 ProSiteProfiles Tify domain profile. 93 128 IPR010399 -
Bma12g00332 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 280 - -
Bma12g00332 324 SMART tify_2 93 128 IPR010399 -
Bma12g00332 324 MobiDBLite consensus disorder prediction 273 324 - -
Bma12g00332 324 Pfam GATA zinc finger 233 269 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 PANTHER GATA TRANSCRIPTION FACTOR 28 21 300 IPR045280 GO:0006355
Bma12g00332 324 MobiDBLite consensus disorder prediction 1 54 - -
Bma12g00332 324 SMART GATA_3 227 285 IPR000679 GO:0006355|GO:0043565
Bma12g00332 324 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02579 Bma-Chr1:83419158 Bma12g00332 Bma-Chr12:5430937 4.18E-60 dispersed
Bma02g00116 Bma-Chr2:1077281 Bma12g00332 Bma-Chr12:5430937 3.15E-71 dispersed
Bma04g00427 Bma-Chr4:3442149 Bma12g00332 Bma-Chr12:5430937 3.90E-60 dispersed
Bma12g00332 Bma-Chr12:5430937 Bma03g00101 Bma-Chr3:830343 1.66E-09 dispersed
Bma12g00332 Bma-Chr12:5430937 Bma12g00341 Bma-Chr12:5656612 8.08E-09 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58101 PF06203 CCT 2.00E-16 CL0281 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00332 - - jre:108983906 426.787