Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00358 ATGGCTTCTGCTACACATCTTGTGCATCAAAATGATGGGAGTGAGAGCGCAAGAAGTAACTTTTCAATAATGGAAATGGAGAAGACAGATGGCTTGATGGGAAACGAGAGTTGGAGAAGTGCAGAAAATATGGAAGAGGGTAACAAAACTGGAGTCGTGTTGACATGGAAGGAGGTCGGGGTGACAGTTTCTGACGCCAAAAATGGTGGGAGAAGGTCCATTTTGCAGGGCGTTACTGGGTATGCTTTACCTGGAGAGCTTCTTGCTATTATGGGTCCTTCAGGCTCTGGAAAATCTACACTTCTCGATGCTCTTGCAGGAAGATTGGATCCAAAAACTTGGCAAGTTGGGGAAATACTAATCAATGGAAGAAAACAAGCACTGGCTTACGGAACGTCGGCATATGTGACACAAGATGATGTGCTAATAATGACGTTAACGGTGAGAGAAGCAGTGTACTATTCAGCTCAATTACAGTTACCTGATTCAATGTCAAAATCGGATAAAATAGAGAGAGCAAACACGACAATAAGAGAGATGGGATTACAAGATGCAGTGGACACTAGGATTGGAGGTTGGGGAGCAAAAGGGATCAGTGGTGGCCAGAAAAAAAGGGTTAGTATCTGCATCGAGCTCTTGACTCGTCCTGAGCTTCTCTTTCTTGATGAGCCGACGAGCGGGCTCGATAGTGCCGCATCTTACTATGTGATGAAGAGAATAGCCAAGCTGAGTAATAAAGATGGAATCAGAAGAACAATTATTGCTTCAATTCATCAGCCAAGCAGCGAAGTTTTCCAACTTTTTGATAACCTTTGTCTCATGTCTACTGGTTGTACGGTGTATTTTGGCCCCGCTTCTGCTGCAAATGAGTTCTTCGCTTCCAATGGGTTCCCTTGCCCAAGTCTCCAAAACCCGTCTGATCACTTTCTCAAAACCTTAAATAGAGATTTTGACAAGGATCCTGAAAATGGCATCTCGCAAGCAATAGCAAGAGAAGAGGCGATTGATCTTCTTCAAAAAGCCTACAAATCATCACAAACTTATCAAGAAGTTCAAACAAGAGTTTCAAAAATTACTACAGATAATGAATTCTTAGAGAGAAAAAGAAAAAGTCCTGCTGGATTCCTTACTCAAAGTGTTGTTCTTACAAGAAGATCTTTCGTTAACATGTATCGTGATCTGGGTTACTATTGGCTTCGCCTGGTCATCTATATAGCAGTTACTATTGGTTTAGGCTCTGCTTTCTATGATCTTGAATCTAACTATGGCTCTTACCAGGCTAGAGCAAACCTGCTAGAGTTTGTTGTCACGTTTTTAACTTTTATGGCAATTGGAGGATTTCCTTCATTTGTTGAGGACATGAAGGTCTTTGAACGAGAAAGGCTAAACGGGCACTATGGGGTGAGCACATTTGTGATCAGCAACACACTCTCTCCCATCCCATTCTTGCTCATCATATCATTCATTCCTGGAGCCATAGCTTATTACATTCCTGGACTACACAAAGGAATTGAATATTTCCTCTACTTCACACTAGTTTTGTTTGTCTGCATGATGCTCGTCGAGAGCTTGATGATGATGATCGCGAGCATCGTCCCTAATTTTCTTATGGGAATTATCACAGGTGCCGGTGTTCAAGTTCTGATGATCTTAGGCAGTGGTGTTTTTCGGCTTACAAACGATCTTCCCAAACCCTTTTGGAAATATCCGTTATACTACATTACTTTCCAAAAGTATGCTTTTCAGGGTATGTACAAGAACGAGTTCGATGGCGGAATATATCTTACCAGAGTCAGCAGCCCAATGGGTGGTTGGAGAACAAAAACTCTTACCGGTGACGAAATTTTAAGGGACATTTGGGGAGTTGATATGCAGTACTCAAAGTGGATAGATTTAGCAATCTTGCTGGGAATGATGGTTATATACAGACTTATTTTCTTCACGATCATTAAGGTGGGAGAAAGATTCAAGCTTTTAGTGGCAGCCATGAAAGCACTGCCTTCCAAGAAAGCTACTCAAGTGATGGAGATTTCATCTACGGACTATTAG 2049 41.92 MASATHLVHQNDGSESARSNFSIMEMEKTDGLMGNESWRSAENMEEGNKTGVVLTWKEVGVTVSDAKNGGRRSILQGVTGYALPGELLAIMGPSGSGKSTLLDALAGRLDPKTWQVGEILINGRKQALAYGTSAYVTQDDVLIMTLTVREAVYYSAQLQLPDSMSKSDKIERANTTIREMGLQDAVDTRIGGWGAKGISGGQKKRVSICIELLTRPELLFLDEPTSGLDSAASYYVMKRIAKLSNKDGIRRTIIASIHQPSSEVFQLFDNLCLMSTGCTVYFGPASAANEFFASNGFPCPSLQNPSDHFLKTLNRDFDKDPENGISQAIAREEAIDLLQKAYKSSQTYQEVQTRVSKITTDNEFLERKRKSPAGFLTQSVVLTRRSFVNMYRDLGYYWLRLVIYIAVTIGLGSAFYDLESNYGSYQARANLLEFVVTFLTFMAIGGFPSFVEDMKVFERERLNGHYGVSTFVISNTLSPIPFLLIISFIPGAIAYYIPGLHKGIEYFLYFTLVLFVCMMLVESLMMMIASIVPNFLMGIITGAGVQVLMILGSGVFRLTNDLPKPFWKYPLYYITFQKYAFQGMYKNEFDGGIYLTRVSSPMGGWRTKTLTGDEILRDIWGVDMQYSKWIDLAILLGMMVIYRLIFFTIIKVGERFKLLVAAMKALPSKKATQVMEISSTDY 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6184040 6186942 + Bma007285.1 Bma12g00358 91784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00358 682 ProSitePatterns ABC transporters family signature. 198 212 IPR017871 GO:0005524
Bma12g00358 682 MobiDBLite consensus disorder prediction 1 20 - -
Bma12g00358 682 CDD ABCG_EPDR 51 283 - -
Bma12g00358 682 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 46 676 - -
Bma12g00358 682 PANTHER - 46 676 - -
Bma12g00358 682 Pfam ABC transporter 77 226 IPR003439 GO:0005524
Bma12g00358 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 290 IPR027417 -
Bma12g00358 682 Gene3D - 53 371 IPR027417 -
Bma12g00358 682 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 301 IPR003439 GO:0005524
Bma12g00358 682 SMART AAA_5 84 278 IPR003593 -
Bma12g00358 682 Coils Coil 348 368 - -
Bma12g00358 682 Pfam ABC-2 type transporter 378 589 IPR013525 GO:0016020|GO:0140359
Bma12g00358 682 Pfam ABC-2 type transporter 258 357 IPR043926 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00358 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - jre:108980007 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01552 Bma-Chr3:51500959 Bma12g00358 Bma-Chr12:6184040 0 dispersed
Bma06g00470 Bma-Chr6:21808088 Bma12g00358 Bma-Chr12:6184040 1.62E-54 dispersed
Bma10g00683 Bma-Chr10:10311021 Bma12g00358 Bma-Chr12:6184040 0 dispersed
Bma11g00296 Bma-Chr11:2773467 Bma12g00358 Bma-Chr12:6184040 0 dispersed
Bma12g00358 Bma-Chr12:6184040 Bma14g00448 Bma-Chr14:5164641 3.63E-117 dispersed
Bma12g00358 Bma-Chr12:6184040 Bma10g00682 Bma-Chr10:10263899 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1022 . . . . . . . Bma12g00358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018095 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00358 Bma_Chr12 FPKM 2.609418 2.760125 3.803193 4.238464 4.250631 4.092039 3.858014 0.0 0.0 0.0