Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00369 AATTTTCAGGAGCTAGACGAGTTGAAGAAACGTTTGAAAGAAATGGAGGACGAAGCAGCTGCCCTGCGTGAGATGCAAGCGAAGGTCGAGAAAGAGATGAGCTCTGTACAAGATTCAGTTAATGCTGCTGGAAGTCAAGCTAATAAAGAGGAAGTAGATTCCAGATCAGTGTTTGTGGGTAATGTGGATTATTCTTGTACCCCTGAGGAAGTCCAACAACATTTCCAGTCATGTGGGACAGTCAATAGAGTGACCATTCGAACCGACAAGTTTGGACAGCCAAAAGGCTATGCTTATGTAGAATTTGTTGAAGCCGAAGCTGTTCAAGAGGCTATCCTTCTTAATGAATCGGAGCTACACGGTCGACAGCTGAAGGTAACTGCTAAGCGAACCAATGTACCTGGGATGAAGCAACTTTGGCCCCGTCGAGCCAACCCTTACATGGGTTTTAGACCCCGGGGGCCATATATACCTCCATATCTCTACTCGCCTTATGGATACGGGAAGGTCCCAAGGTTCAGAATGCCCATGCGTTACAGCCCTTACTATTGA 552 46.56 NFQELDELKKRLKEMEDEAAALREMQAKVEKEMSSVQDSVNAAGSQANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEAEAVQEAILLNESELHGRQLKVTAKRTNVPGMKQLWPRRANPYMGFRPRGPYIPPYLYSPYGYGKVPRFRMPMRYSPYY 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6681712 6685959 + Bma007303.1 Bma12g00369 91795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00369 183 SUPERFAMILY RNA-binding domain, RBD 46 154 IPR035979 GO:0003676
Bma12g00369 183 PANTHER - 3 180 - -
Bma12g00369 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 125 IPR000504 GO:0003723
Bma12g00369 183 Coils Coil 5 32 - -
Bma12g00369 183 CDD RRM_II_PABPs 56 127 - -
Bma12g00369 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 131 IPR000504 GO:0003723
Bma12g00369 183 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 180 - -
Bma12g00369 183 Gene3D - 2 128 IPR012677 -
Bma12g00369 183 SMART rrm1_1 56 127 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00369 K14396 PABPN1, PABP2; polyadenylate-binding protein 2 - zju:107405946 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00369 Bma-Chr12:6681712 Bma15g01054 Bma-Chr15:42449942 1.79E-105 dispersed
Bma12g00369 Bma-Chr12:6681712 Bma15g01051 Bma-Chr15:42331817 1.39E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1018 . . . . . . . Bma12g00369 . . . . . . . . . . . . . . . . Cla10g00890 Cam10g0915 . Cco10g0911 Clacu10g0942 Cmu10g1729 Cre10g1101 . . . . . . . . . . . . . . . . . . Cmo16g00250 . . . . Cpe14g00191 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000374 6 8 4 4 4 3 7 3 3 4 3 3 6 4 4 6 3 6 5 3 4 3 4 3 4 2 4 8 5 1 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00369 Bma_Chr12 FPKM 11.783863 13.031744 7.776505 6.563232 11.662935 10.178651 13.833639 2.541332 2.592433 3.292902