Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00370 ATGGCTATTGTTTACCGTTTTGCCGCTCTCCTTTCTGCTCTGTTTCTTCTTTCCGCCATTGTCGGACCTTCGCACGCTGTTCTTGTGGAGCAGCAGCCGTTGATATTGAAATATCATAACGGTGCTCTCTTGAAGGGAAATATCTCTGTTAATCTTATCTGGTACGGTCATTTTACTCCTGTACAACGGTCTATAATCGTTGATTTCGTCCGTTCCCTTGGCTTCGGCAGGGCTACGCTTCCCTCCGCCGCATCCTGGTGGAAGACGACTGAGAAATACAAAGGTGGTTCTTCAAACCTTGTCGTCGGGAAGCAAGTCCTTCATGAAGCTTACACTCTGGGTAAGAGTCTCCGCCGCTCGCACCTGCTTGCTCTGGCCGGAAAAAATAACGGGCCCGATTCGATTAGCGTTGTTTTGACTGCAAAGGACGTCGCAGTTGAAGGATTTTGTATGAGTAGCTGCGGGACCCACGGGTCTATTCCGGCGGCTCAGGGAAAATCCCGGGTGGCCTACATATGGGTTGGGAATTCAGAGGTTCAATGTCCGGGTCAGTGCGCGTGGCCGTTTCACCCAGCCTGGTTACCCGGGAACGACCCTTGTGGATAA 606 51.49 MAIVYRFAALLSALFLLSAIVGPSHAVLVEQQPLILKYHNGALLKGNISVNLIWYGHFTPVQRSIIVDFVRSLGFGRATLPSAASWWKTTEKYKGGSSNLVVGKQVLHEAYTLGKSLRRSHLLALAGKNNGPDSISVVLTAKDVAVEGFCMSSCGTHGSIPAAQGKSRVAYIWVGNSEVQCPGQCAWPFHPAWLPGNDPCG 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6688158 6688763 - Bma007304.1 Bma12g00370 91796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00370 201 PANTHER PROTEIN EXORDIUM-LIKE 5 15 191 IPR006766 -
Bma12g00370 201 PANTHER PROTEIN EXORDIUM-LIKE 2 15 191 - -
Bma12g00370 201 Pfam Phosphate-induced protein 1 conserved region 36 192 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00370 - - - zju:107427741 291.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00370 Bma-Chr12:6688158 Bma08g00149 Bma-Chr8:1903099 5.28E-32 dispersed
Bma12g00370 Bma-Chr12:6688158 Bma05g00595 Bma-Chr5:36133492 2.51E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1017 . . . . . . . Bma12g00370 . . . . . . . . . . . . . . . . Cla10g00891 . Cec10g0954 . . . . Cone12ag0978 . . . . . . . . . Bda15g00495 . . . . . . Cmo04g00665 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015723 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00370 Bma_Chr12 FPKM 8.567734 9.025363 23.421549 23.444651 26.911945 23.041336 25.55847 46.25703 47.343994 48.083786