Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00371 ATGGCGTCAATCAAGACTATAGTTGAATCAGCTCATCTCACCTCAGTTCCTTCCTCTTACATCTTTACCAGAAACCCTGATGACGTTCCAGTTTCAGAAAACCAGGAAGAACATGGTGAAACAATCCCAACGGTTGATTTCTCTCTACTTATTTCAAGATCCTCGGACCAACGTCGCAAGGTCATTGAAGAGCTGGGTAGAGCCTGTCAGGACTGGGGCTTCTTCGTGTTGATCAACCATGGCATACCTGAGAGCTTGACGAAGGAAATGGTGGATTATGTGAGAGAGTTTTTCGATCTGCCGGAGGAAGAGAAGGCGGAGTTTGAAGGTAAAACTGTGTTGGACCCAATTAGATATGGCACTAGCTTCAATGCTTCAGTGGACAAGGTTTTTTTTTGGAGGGATTATCTGAAGATTATGGTTCATCCTCACTTTCACTTCCCTACTAAACCGGCTGGATACAGGGAGAGAGCAGAAGAATACTGCAGAAGAATTAGAGAAGCAGTTAGAGAATTGCTTGAAGGAATATCTGAGAGCTTGGGATTGGAATCCACATACATAGGAAAGGCATTGAACATTGACGCGAGCCTTCAGATCTTTGTTGCAAATCTATATCCACCATGCCCACAGCCGGATCTGGCAATGGGATTACCACCTCATTCAGACCAAGGCATCTTAACTCTCCTCACTCATAATGGAATTCGTGGGCTTCAAATTCAACATAATGGTAAATGGGTCGACGTTGATCACATTCCCAACTCACTTTTAGTCAACACTGGTGACCATCTTGAGATACTAAGCAACGGCAAGATTAAGAGTGTGTTACATAGAGCAGTGGTCAACAATAAAAGCACAAGAATATCAATGGTCATGACCAATGGACCATCACTGGATACAGTGGTTAGCCCAGCGCCAGAGTTGGTAGACGATGAGACAAATCCCGCAGCATACAGGGGAATGAAATTTAGGGAGTACTTGCAACTTCAACAGAGTAACAAGCTTGATGGGAAAAGCGGTTTAGATAGAGTTCGTCTTTCAGTTTAA 1044 43.87 MASIKTIVESAHLTSVPSSYIFTRNPDDVPVSENQEEHGETIPTVDFSLLISRSSDQRRKVIEELGRACQDWGFFVLINHGIPESLTKEMVDYVREFFDLPEEEKAEFEGKTVLDPIRYGTSFNASVDKVFFWRDYLKIMVHPHFHFPTKPAGYRERAEEYCRRIREAVRELLEGISESLGLESTYIGKALNIDASLQIFVANLYPPCPQPDLAMGLPPHSDQGILTLLTHNGIRGLQIQHNGKWVDVDHIPNSLLVNTGDHLEILSNGKIKSVLHRAVVNNKSTRISMVMTNGPSLDTVVSPAPELVDDETNPAAYRGMKFREYLQLQQSNKLDGKSGLDRVRLSV 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6970411 6980577 + Bma007310.1 Bma12g00371 91797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00371 347 Pfam 2OG-Fe(II) oxygenase superfamily 199 290 IPR044861 -
Bma12g00371 347 Gene3D - 1 335 IPR027443 -
Bma12g00371 347 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 8 339 - -
Bma12g00371 347 Pfam non-haem dioxygenase in morphine synthesis N-terminal 42 144 IPR026992 -
Bma12g00371 347 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 195 295 IPR005123 -
Bma12g00371 347 SUPERFAMILY Clavaminate synthase-like 11 337 - -
Bma12g00371 347 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 8 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00371 - - - pvy:116146056 457.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01209 Bma-Chr5:51498430 Bma12g00371 Bma-Chr12:6970411 1.40E-64 dispersed
Bma12g00354 Bma-Chr12:5922301 Bma12g00371 Bma-Chr12:6970411 0 dispersed
Bma12g00371 Bma-Chr12:6970411 Bma14g00091 Bma-Chr14:1281302 4.90E-69 dispersed
Bma12g00371 Bma-Chr12:6970411 Bma01g00830 Bma-Chr1:7815478 2.15E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g991 . . . . . . . Bma12g00371 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0987 . . . . . . . . . . . . . . . . . . . . . . Cpe14g00199 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003038 0 2 2 2 1 1 1 1 1 1 1 1 1 1 2 0 1 4 1 1 1 3 2 3 3 2 4 3 1 5 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00371 Bma_Chr12 FPKM 5.254902 5.336825 7.960955 7.592094 12.067691 12.056442 12.459134 10.247811 8.306183 8.988666