Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00378 ATGTCAAGAGAAGGAATGATACACCCAGATTGCAGAAATGCTTCAAATCCTTACCATAAGTGTAGTGAATATTGTTTTAGAATAATTGCAGAATCTAAGTCTCAAATTCAGATGGTGCAAAAGGAATCAGCTCCAGCTTCTGGGGAACATGATGGTCCTTCCACCTCTGGACCTCCTGATGAGTATGAAGATCTACATGATGAAAAACCAGATTCAGAAGGAAATTCTGATGATTATAATGGGAAATTGAATGGAGAAGCTCTGGAAGGCGAGTTTACAAAACTTACAGGAAGGAAGAAAAAATTGTTTGAACTGAGGCTTAAAATGAACGAAGCTAGGAAAGCTAATCAAACAGCAATAGCAGCTGAAAAGAAAAAAATGGAAGTTCCATTGGAGTCGAGGGGCATCTCAAAACAAAAGTGGCTTGATGAGAGGAAGAAAAAGATTGGGAAACTTTTGGACGCAAATGGTTTGGACATGACAAAGGCTTACATGCTAGACACGCAAGATGCAGCAGAGGCAAAATATAAGAAATGGGATAAGGATCCGGCTCCATATGGCTGGGATGTGTTTAATCAGAAGACTTTGTACAATGCTCACAAAAAACGTACGAAGAATATTGAGGTTGACCTAGAGGAATATAATAAAATGAAAGAAGCTGACCCAGAGTTTTACCGTGAAGCCTCAAGTCTCAAATATGGGAAGTCCTTAACTAATGTTTCCTCGCTTCAAGTCTTAGATCTTTCAAATAACAAACTAACTGGAGATATTCCCGTCAATGGTTCCTTTTCTATATTCACCCCAATCAGTTTTGCAAATAATCATCTGAATAATCCTCCACCTTCACCGCCACCTCCAGTTCCTCAATCACCACCAACTTCATCAGGGAATACTGCCACTGGAGCAATTGCTGGAGGAGTTGCTGCCGCTGCTGCCTTGCTTTTTGCTATCCCTGCAATTGCACTTGCTTTGTGGCGTCGACGAAGACCACACGACCACTTCTTTGATGTACCTGCTGAGGAGGATCCAGAAGTTCATCTTGGCCAGCTCAAAAGGTTTTCTCTGCGGGAGCTACAAGTCGCCACTGACTACTTCAGCAATAAACATGTTTTGGGTAGAGGTGGCTTTGGCAAGGTGTACAAAGGCCGTTTGGCCGATGGTACTCTGGTAGCAGTCAAAAGACTTAAAGAGGAGCGTACCCAGGGTGGAGAGCTGCAATTCCAAACTGAAGTAGAGATGATCAGCATGGCTGTGCATCGCAATCTGCTACGATTACGTGGTTTCTGCATGACACCAACCGAGCGGTTGCTTGTTTATCCTTACATGGCTAATGGGAGTGTAGCGTCATGTCTAAGAGAGCGCCCAGAAACACAGCAACCACTTAATTGGTCAATACGCAAACACATTGCTCTTGGCGCTGCTAGGGGTCTTTCTTACTTACATGATCATTGCGATCCGAAGATTATTCACCGAGATGTAAAAGCTGCAAATATTTTATTGGATGAAGAATTTGAAGCTGTTGTAGGGGATTTTGGGCTGGCTAAGCTCATGGACTATAAAGATACTCATGTCACAACTGCAGTGCGTGGTACTATTGGACACATAGCACCAGAATACCTTTCAACTGGAAAATCTTCAGAGAAGACAGATTGTTTCGGATATGGAGTGATGCTTCTTGAACTCATAACTGGACAGAGAGCTTTTGATCTTGCCCGCCTTGCAAATGATGATGATGTCATGTTACTTGATTGGGTGAAAGGGCTTCTGAAAGACAAGAAGCTGGAGACTCTTGTGGATCCCGACCTTCAAGGAAATTATGTGGAGGCAGAGGTGGAGGAGCTCATTCAAGTCGCACTACTTTGCACCCAAAACTCTCCCATAGAGCGTCCGAAAATGTCAGAGGTCGTGAGGATGCTCGAAGGTGATGGCTTGGCAGAAAGATGGGAAGAGTGGGAGAAAGAGGATCGGTTTGTCAACGACTTTAACCGGACTCAACCCCCCCACCCAAGTATGACTTGGATCGTTGACTCGACATCTAACATTCCTCCCGATGACTTATCCGGCCCAAGGTGA 2073 44.04 MSREGMIHPDCRNASNPYHKCSEYCFRIIAESKSQIQMVQKESAPASGEHDGPSTSGPPDEYEDLHDEKPDSEGNSDDYNGKLNGEALEGEFTKLTGRKKKLFELRLKMNEARKANQTAIAAEKKKMEVPLESRGISKQKWLDERKKKIGKLLDANGLDMTKAYMLDTQDAAEAKYKKWDKDPAPYGWDVFNQKTLYNAHKKRTKNIEVDLEEYNKMKEADPEFYREASSLKYGKSLTNVSSLQVLDLSNNKLTGDIPVNGSFSIFTPISFANNHLNNPPPSPPPPVPQSPPTSSGNTATGAIAGGVAAAAALLFAIPAIALALWRRRRPHDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDYFSNKHVLGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPETQQPLNWSIRKHIALGAARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDCFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDPDLQGNYVEAEVEELIQVALLCTQNSPIERPKMSEVVRMLEGDGLAERWEEWEKEDRFVNDFNRTQPPHPSMTWIVDSTSNIPPDDLSGPR 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7224813 7235341 - Bma007320.1 Bma12g00378 91804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00378 690 SUPERFAMILY Protein kinase-like (PK-like) 344 640 IPR011009 -
Bma12g00378 690 Pfam Protein kinase domain 366 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00378 690 ProSiteProfiles Protein kinase domain profile. 365 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00378 690 Gene3D Phosphorylase Kinase; domain 1 334 441 - -
Bma12g00378 690 MobiDBLite consensus disorder prediction 274 299 - -
Bma12g00378 690 MobiDBLite consensus disorder prediction 277 292 - -
Bma12g00378 690 PANTHER BNAA08G11770D PROTEIN 231 690 IPR031048 GO:0004675|GO:0005102|GO:0006468
Bma12g00378 690 Gene3D Transferase(Phosphotransferase) domain 1 442 659 - -
Bma12g00378 690 Pfam SYF2 splicing factor 156 236 IPR013260 -
Bma12g00378 690 ProSiteProfiles Leucine-rich repeat profile. 242 264 IPR001611 GO:0005515
Bma12g00378 690 SUPERFAMILY L domain-like 237 281 - -
Bma12g00378 690 MobiDBLite consensus disorder prediction 668 690 - -
Bma12g00378 690 MobiDBLite consensus disorder prediction 36 84 - -
Bma12g00378 690 Gene3D Ribonuclease Inhibitor 235 275 IPR032675 -
Bma12g00378 690 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
Bma12g00378 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Bma12g00378 690 MobiDBLite consensus disorder prediction 668 684 - -
Bma12g00378 690 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 231 690 - -
Bma12g00378 690 MobiDBLite consensus disorder prediction 56 76 - -
Bma12g00378 690 SMART serkin_6 365 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02531 Bma-Chr1:83013773 Bma12g00378 Bma-Chr12:7224813 0 dispersed
Bma01g02534 Bma-Chr1:83036662 Bma12g00378 Bma-Chr12:7224813 6.75E-09 dispersed
Bma05g00578 Bma-Chr5:33676537 Bma12g00378 Bma-Chr12:7224813 1.25E-144 dispersed
Bma07g00722 Bma-Chr7:18278365 Bma12g00378 Bma-Chr12:7224813 6.40E-141 dispersed
Bma07g00724 Bma-Chr7:18574395 Bma12g00378 Bma-Chr12:7224813 8.03E-139 dispersed
Bma08g00748 Bma-Chr8:43911175 Bma12g00378 Bma-Chr12:7224813 7.08E-06 dispersed
Bma12g00378 Bma-Chr12:7224813 Bma12g00395 Bma-Chr12:8275186 2.83E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66811 PF00069 Pkinase 1.20E-44 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00378 K13416 - rcu:8277786 746.117