Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00381 ATGTCATTCCGTAGCCTTGTGCGTGATGTAAGGGATGGTATCGGAAGCTTATCCCGGCGAGGATTCGACATCAGACTGTCCGGTCATAGCTGCGGAAAATCGGACGGGTCACAAGGTGATTTGCAAGATCCGCTTGTGGGTCAAAGCAGTTGTTGGGCCAACCTCCCCCCCGAGCTCCTTTACGATGTAATTAGGAGGCTGGAGGAGAGTGAAAGCACATGGCCCGCCAGAAAGCATGTCATCGCCTGTGCTGCCGTTTGCCGTTCTTGGAGAAACACTTGCAAAGAATTAGTTAAAAATCCTGAATTTTGTGGAAAGCTTACCTTTCCTGTGTCCCTAAAGCAGCCGGGGCCACGGGACGGAACAATCCAGTGCTTCATTAAAAGGGACAAGTCGAATTTAACTTACCACCTTTATCTATCTTTGCTAGTAGAAAATGGGAAATTTCTTCTTTCTGCAAAACGGACACGAAGAACAACTAGCACTGAGTATGTTATCTCGATGGATGCCGAGAACATCTCAAGATCGAGTAGCAGCTACATTGGAAAACTAAGATCAAATTTTCTTGGTACGAAGTTCATCATTTACGACACGCAACCTCCATACACAGCCGTCTCCGTTCCTACTCCCGGTAAAACAAGTCGAAGATTCAACTCCAAAAAGGTCTCCCCAAAAGTCCCAAGCGGGAGCTACAATATCGCCCAATTGGCTTACGAACTAAACGTGTTGGGCACGCGGGGCCCGCGGAGAATGCACTGTGTGATGCATTCAATCCCGCTCTCGTCTCTCGATGCTGGTGGGTCCGTCCCCGGCCAGCCGGAGCTCCTTCCACGCCCACTCGAAGACTCGTTCCGGAGCATATCCTTCTCAAAATCTCTCGATTACTCTATGGAGTTCAGCAGCTCAAGGTTTTCCGAAATCAGCAGACGCCTCGACAGTGAGGGGGAGGAAAAGACGATGATGCCCTTGGTCCTGAAAAACAAGCCGCCAAGGTGGCACGAGCAATTGCAGTGCTGGTGTTTGAATTTCCGAGGGCGGGTAACTGTTGCTTCCGTGAAGAACTTTCAGCTAATTGCAGGCACGCAACCAGGGGCTGGAGCTCCAACGCCATCTCAACCGACCCCGCCTGATCATGATAAGATAATTCTTCAGTTTGGGAAAGTCGGCAAAGACATGTTTACGATGGATTATCGTTATCCGTTATCGGCTTTTCAGGCTTTTGCCATTTGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 1266 49.45 MSFRSLVRDVRDGIGSLSRRGFDIRLSGHSCGKSDGSQGDLQDPLVGQSSCWANLPPELLYDVIRRLEESESTWPARKHVIACAAVCRSWRNTCKELVKNPEFCGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLSLLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSSYIGKLRSNFLGTKFIIYDTQPPYTAVSVPTPGKTSRRFNSKKVSPKVPSGSYNIAQLAYELNVLGTRGPRRMHCVMHSIPLSSLDAGGSVPGQPELLPRPLEDSFRSISFSKSLDYSMEFSSSRFSEISRRLDSEGEEKTMMPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGTQPGAGAPTPSQPTPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7436285 7437988 + Bma007334.1 Bma12g00381 91807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00381 421 Gene3D - 48 100 - -
Bma12g00381 421 Pfam Tub family 113 416 IPR000007 -
Bma12g00381 421 ProSitePatterns Tub family signature 2. 406 421 IPR018066 -
Bma12g00381 421 PANTHER TUBBY-RELATED 1 421 - -
Bma12g00381 421 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Bma12g00381 421 SUPERFAMILY F-box domain 47 96 IPR036047 GO:0005515
Bma12g00381 421 Pfam F-box domain 52 99 IPR001810 GO:0005515
Bma12g00381 421 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Bma12g00381 421 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Bma12g00381 421 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Bma12g00381 421 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Bma12g00381 421 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Bma12g00381 421 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Bma12g00381 421 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Bma12g00381 421 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 421 - -
Bma12g00381 421 SUPERFAMILY Tubby C-terminal domain-like 101 421 IPR025659 -
Bma12g00381 421 Gene3D Tubby Protein; Chain A 109 421 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00381 K19600 TUB, TULP; tubby and related proteins - jre:109007061 714.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01098 Bma-Chr4:24956520 Bma12g00381 Bma-Chr12:7436285 1.38E-153 dispersed
Bma12g00381 Bma-Chr12:7436285 Bma12g00402 Bma-Chr12:8538269 0 dispersed
Bma12g00381 Bma-Chr12:7436285 Bma05g00558 Bma-Chr5:31534520 0 wgd
Bma12g00381 Bma-Chr12:7436285 Bma05g00585 Bma-Chr5:34169253 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00585 . 1 426 TUB Transcription Factor Family AT1G76900 70.5 2.3e-172 602.1
Bma05g00558 . 1 430 TUB Transcription Factor Family AT1G76900 69.3 9.0e-169 590.1
Bma01g02507 BCT 1 424 TUB Transcription Factor Family AT1G76900 69.2 7.6e-168 587.0
Bma12g01166 . 1 427 TUB Transcription Factor Family AT1G76900 68.8 1.3e-167 586.3
Bma04g00369 BCT 1 447 TUB Transcription Factor Family AT1G76900 65.9 6.7e-164 573.9
Bma12g00381 . 1 421 TUB Transcription Factor Family AT1G76900 68.6 1.9e-163 572.4
Bma12g00402 . 1 421 TUB Transcription Factor Family AT1G76900 68.9 2.5e-163 572.0
Bma04g01707 . 1 433 TUB Transcription Factor Family AT1G76900 66.7 2.6e-160 562.0
Bma04g00212 . 1 413 TUB Transcription Factor Family AT1G76900 51.2 2.5e-118 422.5
Bma12g00381 . 168 421 TUB Transcription Factor Family AT1G25280 73.0 3.1e-100 361.7
Bma12g00402 . 168 421 TUB Transcription Factor Family AT1G25280 72.7 5.2e-100 360.9
Bma05g00558 . 177 430 TUB Transcription Factor Family AT1G25280 70.8 1.3e-98 356.3
Bma05g00585 . 173 426 TUB Transcription Factor Family AT1G25280 70.8 1.7e-98 355.9
Bma01g02507 BCT 173 424 TUB Transcription Factor Family AT1G25280 67.7 4.7e-93 337.8
Bma12g01166 . 173 427 TUB Transcription Factor Family AT1G25280 64.8 4.0e-92 334.7
Bma04g00369 BCT 194 447 TUB Transcription Factor Family AT1G25280 64.8 6.8e-92 334.0
Bma04g01707 . 183 433 TUB Transcription Factor Family AT1G25280 67.9 1.1e-89 326.6
Bma04g01098 . 156 387 TUB Transcription Factor Family AT1G25280 53.6 3.9e-71 265.0
Bma04g00212 . 177 413 TUB Transcription Factor Family AT1G25280 54.7 5.3e-68 254.6
Bma01g02327 BCT 231 463 TUB Transcription Factor Family AT1G25280 53.8 9.3e-65 243.8
Bma04g01098 . 98 387 TUB Transcription Factor Family AT5G18680 63.1 1.9e-98 355.9
Bma01g02507 BCT 112 424 TUB Transcription Factor Family AT5G18680 51.1 8.4e-83 303.9
Bma12g00402 . 111 421 TUB Transcription Factor Family AT5G18680 53.0 9.3e-82 300.4
Bma12g00381 . 111 421 TUB Transcription Factor Family AT5G18680 52.5 1.2e-81 300.1
Bma05g00585 . 112 426 TUB Transcription Factor Family AT5G18680 51.9 3.9e-80 295.0
Bma04g01707 . 123 433 TUB Transcription Factor Family AT5G18680 50.8 1.1e-79 293.5
Bma05g00558 . 112 430 TUB Transcription Factor Family AT5G18680 51.6 1.9e-79 292.7
Bma04g00212 . 114 413 TUB Transcription Factor Family AT5G18680 50.6 1.1e-77 287.0
Bma05g01061 . 98 247 TUB Transcription Factor Family AT5G18680 58.6 1.1e-42 170.6
Bma04g00212 . 1 413 TUB Transcription Factor Family AT2G18280 56.2 4.5e-124 441.4
Bma12g01166 . 1 427 TUB Transcription Factor Family AT2G18280 52.5 9.0e-117 417.2
Bma12g00381 . 1 421 TUB Transcription Factor Family AT2G18280 52.2 2.6e-116 415.6
Bma12g00402 . 1 421 TUB Transcription Factor Family AT2G18280 52.2 4.5e-116 414.8
Bma01g02507 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.0 2.9e-115 412.1
Bma04g01098 . 1 387 TUB Transcription Factor Family AT2G18280 53.3 9.3e-114 407.1
Bma05g00585 . 1 426 TUB Transcription Factor Family AT2G18280 50.7 7.9e-113 404.1
Bma05g00558 . 1 430 TUB Transcription Factor Family AT2G18280 50.5 3.0e-112 402.1
Bma04g01707 . 1 433 TUB Transcription Factor Family AT2G18280 50.7 6.7e-112 401.0
Bma04g01098 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 1.3e-163 572.8
Bma01g02507 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.2 1.0e-131 466.8
Bma12g01166 . 1 427 TUB Transcription Factor Family AT2G47900 54.2 1.1e-130 463.4
Bma12g00381 . 1 421 TUB Transcription Factor Family AT2G47900 55.5 1.9e-130 462.6
Bma05g00585 . 1 426 TUB Transcription Factor Family AT2G47900 55.0 9.6e-130 460.3
Bma12g00402 . 1 421 TUB Transcription Factor Family AT2G47900 55.0 1.3e-129 459.9
Bma04g00369 BCT 1 447 TUB Transcription Factor Family AT2G47900 52.6 8.1e-129 457.2
Bma04g01707 . 1 433 TUB Transcription Factor Family AT2G47900 55.6 5.3e-128 454.5
Bma05g00558 . 1 430 TUB Transcription Factor Family AT2G47900 54.2 6.9e-128 454.1
Bma04g00212 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 1.4e-117 419.9
Bma05g01061 . 1 247 TUB Transcription Factor Family AT2G47900 59.3 1.1e-82 303.9
Bma15g00428 . 36 305 TUB Transcription Factor Family AT1G16070 53.3 9.2e-74 273.9
Bma01g02507 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 2.9e-146 515.0
Bma05g00585 . 65 426 TUB Transcription Factor Family AT1G43640 67.4 8.0e-144 506.9
Bma12g00381 . 64 421 TUB Transcription Factor Family AT1G43640 67.6 1.4e-143 506.1
Bma12g00402 . 64 421 TUB Transcription Factor Family AT1G43640 67.6 1.8e-143 505.8
Bma12g01166 . 65 427 TUB Transcription Factor Family AT1G43640 65.3 2.3e-143 505.4
Bma05g00558 . 65 430 TUB Transcription Factor Family AT1G43640 66.1 4.8e-141 497.7
Bma04g00369 BCT 65 447 TUB Transcription Factor Family AT1G43640 61.6 7.7e-139 490.3
Bma04g01707 . 65 433 TUB Transcription Factor Family AT1G43640 63.6 4.0e-135 478.0
Bma04g01098 . 47 387 TUB Transcription Factor Family AT1G43640 51.9 3.3e-105 378.6
Bma04g00212 . 67 413 TUB Transcription Factor Family AT1G43640 50.7 6.0e-99 357.8
Bma04g00212 . 25 413 TUB Transcription Factor Family AT1G47270 63.5 3.0e-133 471.9
Bma01g02507 BCT 48 424 TUB Transcription Factor Family AT1G47270 56.7 1.1e-114 410.2
Bma05g00585 . 48 426 TUB Transcription Factor Family AT1G47270 54.9 1.9e-111 399.4
Bma12g01166 . 31 427 TUB Transcription Factor Family AT1G47270 52.3 1.2e-110 396.7
Bma12g00381 . 1 421 TUB Transcription Factor Family AT1G47270 51.0 6.2e-110 394.4
Bma12g00402 . 1 421 TUB Transcription Factor Family AT1G47270 51.0 1.1e-109 393.7
Bma05g00558 . 48 430 TUB Transcription Factor Family AT1G47270 53.8 2.0e-108 389.4
Bma04g01098 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 1.4e-106 383.3
Bma04g01707 . 31 433 TUB Transcription Factor Family AT1G47270 51.0 1.9e-106 382.9
Bma01g02327 BCT 193 463 TUB Transcription Factor Family AT1G47270 51.5 1.1e-74 277.3
Bma13g00928 . 1 377 TUB Transcription Factor Family AT1G53320 68.1 4.0e-146 514.6
Bma04g01098 . 33 387 TUB Transcription Factor Family AT1G53320 50.1 2.6e-97 352.4
Bma04g01098 . 98 387 TUB Transcription Factor Family AT3G06380 63.1 1.1e-95 346.7
Bma12g00402 . 115 421 TUB Transcription Factor Family AT3G06380 51.9 3.4e-81 298.5
Bma12g00381 . 115 421 TUB Transcription Factor Family AT3G06380 51.3 2.2e-80 295.8
Bma01g02507 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 4.9e-80 294.7
Bma05g00585 . 116 426 TUB Transcription Factor Family AT3G06380 52.1 1.4e-79 293.1
Bma05g00558 . 116 430 TUB Transcription Factor Family AT3G06380 51.4 5.5e-79 291.2
Bma04g01707 . 123 433 TUB Transcription Factor Family AT3G06380 51.4 7.1e-79 290.8
Bma04g00212 . 118 413 TUB Transcription Factor Family AT3G06380 52.8 1.1e-76 283.5
Bma05g01061 . 98 247 TUB Transcription Factor Family AT3G06380 58.7 1.4e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58103 PF01167 Tub 5.20E-116 CL0395 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00381 Bma_Chr12 FPKM 3.926812 5.202035 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0