Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00386 ATGGAGAGAATGAAAGAAGAAAATATTGGGTTGAGGAAGGTCGTGGAGAAAATTATGAAAGACTACTACGATCTTCAAATGAAATTCTCAGTTATTCAACAAAACAGCCAAGAACAGGTAATTAATCCAGACTGTCTTTCATTCTACTGTATTTTTCTTAAGCATCATTTTTTTTTTGATTTCGTAATTATTAAGGATCTGAACCAGACATATTTCTCTCCACCAAACGGAGGGGAGACAAGAGAGAGCGATCTAGGCTTGACACTAAGCTTAAACTACGCAACTTCAGAAAGAAAAGATGAAGATAAAGAAAAGACCGTAGAAGAAATGACGAGTTCGCCATTAATGGAAGAAAACAAGCTTGAGATCAGGACTGAATTGCCTGGAATTACTACCCATGTATCCTCTCCTCCGAACAGAAAAGCGAGGGTTTCTGTTAGAGCAAAATGTGAAGCAGCCACAATGAACGATGGTTGTCAATGGAGAAAATATGGGCAGAAAGTTGCGAAAGGAAACCCTTGTCCTCGAGCCTACTACCGCTGCACAGCAGCTCCGGGATGTCCAGTTAGAAAACAGGTGCAAAGATGCTTGGAAGACATGTCCATTCTGATAACAACGTACGAAGGAAATCATAATCATCCACTTCCAGTTGGTGCAACAGCCATGGCCTCCACAGCTTCTGCAGCTGCTTCATTTACCTTATTGGACGCACCAGAAGCTTCTTCTTTCAACTCATCTTCTCAATCTTCAAAACCCTTCAACGGCGTCATTTCCGATGAGCGATATCCTGGAAGTTTTTTTGATCTCACAAAAAATTTGTATGATTCCTCACATTTCCCATCAAATTCAGTGCAATTTCCGGGTTTTAGTTGGGTTCAAGGCAAACCAAGTTACCTCAATGGAAATAATCCATTTCCTAGCTTCAGAAATGTGGATCAAAAGGCATTGAAAGAAGGAGGAAATCAATCACTGGCTGAAAATATTTCCACCGTCATCGCGTCGGACCCGAAATTTCATGTGGCGGTTGCAGCTGCCATTACCTCCCTTATGAACAAAGAGAGCAATTCAGCTAATCCACTCACAGGAAGTGGTTATGGTCCGAGAGCCGGATCGATCGGCTGCTTTGTCGACTCCGTTGCTTCGAAAGATAAGTCGACAATTCATCGTTTTCCATGA 1176 41.92 MERMKEENIGLRKVVEKIMKDYYDLQMKFSVIQQNSQEQVINPDCLSFYCIFLKHHFFFDFVIIKDLNQTYFSPPNGGETRESDLGLTLSLNYATSERKDEDKEKTVEEMTSSPLMEENKLEIRTELPGITTHVSSPPNRKARVSVRAKCEAATMNDGCQWRKYGQKVAKGNPCPRAYYRCTAAPGCPVRKQVQRCLEDMSILITTYEGNHNHPLPVGATAMASTASAAASFTLLDAPEASSFNSSSQSSKPFNGVISDERYPGSFFDLTKNLYDSSHFPSNSVQFPGFSWVQGKPSYLNGNNPFPSFRNVDQKALKEGGNQSLAENISTVIASDPKFHVAVAAAITSLMNKESNSANPLTGSGYGPRAGSIGCFVDSVASKDKSTIHRFP 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7655896 7657235 - Bma007341.1 Bma12g00386 91812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00386 391 ProSiteProfiles WRKY domain profile. 150 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma12g00386 391 Pfam WRKY DNA -binding domain 156 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma12g00386 391 Gene3D WRKY domain 140 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma12g00386 391 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 357 IPR044810 GO:0003700
Bma12g00386 391 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 1 357 - -
Bma12g00386 391 SUPERFAMILY WRKY DNA-binding domain 149 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma12g00386 391 SMART WRKY_cls 155 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00846 Bma-Chr10:15059408 Bma12g00386 Bma-Chr12:7655896 4.03E-26 dispersed
Bma12g00386 Bma-Chr12:7655896 Bma12g00408 Bma-Chr12:9040955 3.92E-34 dispersed
Bma12g00813 Bma-Chr12:37749618 Bma12g00386 Bma-Chr12:7655896 9.35E-28 dispersed
Bma12g00386 Bma-Chr12:7655896 Bma08g00644 Bma-Chr8:40567513 9.19E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58104 PF03106 WRKY 1.50E-24 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00386 - - var:108321024 337.421