Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00386 | ATGGAGAGAATGAAAGAAGAAAATATTGGGTTGAGGAAGGTCGTGGAGAAAATTATGAAAGACTACTACGATCTTCAAATGAAATTCTCAGTTATTCAACAAAACAGCCAAGAACAGGTAATTAATCCAGACTGTCTTTCATTCTACTGTATTTTTCTTAAGCATCATTTTTTTTTTGATTTCGTAATTATTAAGGATCTGAACCAGACATATTTCTCTCCACCAAACGGAGGGGAGACAAGAGAGAGCGATCTAGGCTTGACACTAAGCTTAAACTACGCAACTTCAGAAAGAAAAGATGAAGATAAAGAAAAGACCGTAGAAGAAATGACGAGTTCGCCATTAATGGAAGAAAACAAGCTTGAGATCAGGACTGAATTGCCTGGAATTACTACCCATGTATCCTCTCCTCCGAACAGAAAAGCGAGGGTTTCTGTTAGAGCAAAATGTGAAGCAGCCACAATGAACGATGGTTGTCAATGGAGAAAATATGGGCAGAAAGTTGCGAAAGGAAACCCTTGTCCTCGAGCCTACTACCGCTGCACAGCAGCTCCGGGATGTCCAGTTAGAAAACAGGTGCAAAGATGCTTGGAAGACATGTCCATTCTGATAACAACGTACGAAGGAAATCATAATCATCCACTTCCAGTTGGTGCAACAGCCATGGCCTCCACAGCTTCTGCAGCTGCTTCATTTACCTTATTGGACGCACCAGAAGCTTCTTCTTTCAACTCATCTTCTCAATCTTCAAAACCCTTCAACGGCGTCATTTCCGATGAGCGATATCCTGGAAGTTTTTTTGATCTCACAAAAAATTTGTATGATTCCTCACATTTCCCATCAAATTCAGTGCAATTTCCGGGTTTTAGTTGGGTTCAAGGCAAACCAAGTTACCTCAATGGAAATAATCCATTTCCTAGCTTCAGAAATGTGGATCAAAAGGCATTGAAAGAAGGAGGAAATCAATCACTGGCTGAAAATATTTCCACCGTCATCGCGTCGGACCCGAAATTTCATGTGGCGGTTGCAGCTGCCATTACCTCCCTTATGAACAAAGAGAGCAATTCAGCTAATCCACTCACAGGAAGTGGTTATGGTCCGAGAGCCGGATCGATCGGCTGCTTTGTCGACTCCGTTGCTTCGAAAGATAAGTCGACAATTCATCGTTTTCCATGA | 1176 | 41.92 | MERMKEENIGLRKVVEKIMKDYYDLQMKFSVIQQNSQEQVINPDCLSFYCIFLKHHFFFDFVIIKDLNQTYFSPPNGGETRESDLGLTLSLNYATSERKDEDKEKTVEEMTSSPLMEENKLEIRTELPGITTHVSSPPNRKARVSVRAKCEAATMNDGCQWRKYGQKVAKGNPCPRAYYRCTAAPGCPVRKQVQRCLEDMSILITTYEGNHNHPLPVGATAMASTASAAASFTLLDAPEASSFNSSSQSSKPFNGVISDERYPGSFFDLTKNLYDSSHFPSNSVQFPGFSWVQGKPSYLNGNNPFPSFRNVDQKALKEGGNQSLAENISTVIASDPKFHVAVAAAITSLMNKESNSANPLTGSGYGPRAGSIGCFVDSVASKDKSTIHRFP | 391 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7655896 | 7657235 | - | Bma007341.1 | Bma12g00386 | 91812 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00386 | 391 | ProSiteProfiles | WRKY domain profile. | 150 | 216 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma12g00386 | 391 | Pfam | WRKY DNA -binding domain | 156 | 214 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma12g00386 | 391 | Gene3D | WRKY domain | 140 | 217 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bma12g00386 | 391 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 1 | 357 | IPR044810 | GO:0003700 | |
Bma12g00386 | 391 | PANTHER | WRKY TRANSCRIPTION FACTOR 9-RELATED | 1 | 357 | - | - | |
Bma12g00386 | 391 | SUPERFAMILY | WRKY DNA-binding domain | 149 | 216 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bma12g00386 | 391 | SMART | WRKY_cls | 155 | 215 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma10g00846 | Bma-Chr10:15059408 | Bma12g00386 | Bma-Chr12:7655896 | 4.03E-26 | dispersed | |
Bma12g00386 | Bma-Chr12:7655896 | Bma12g00408 | Bma-Chr12:9040955 | 3.92E-34 | dispersed | |
Bma12g00813 | Bma-Chr12:37749618 | Bma12g00386 | Bma-Chr12:7655896 | 9.35E-28 | dispersed | |
Bma12g00386 | Bma-Chr12:7655896 | Bma08g00644 | Bma-Chr8:40567513 | 9.19E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58104 | PF03106 | WRKY | 1.50E-24 | CL0274 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00386 | - | - | var:108321024 | 337.421 |