Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00392 ATGGCTGCGACATCTGGGTCTGTGCTTAATGGATTAAGCTCTCCTTTCTTGTGCGGAGGGAATAGAAGCCAGGCCTTGCTGGCCGGACCAGCCAGAGTCGCCGTCAGTGCCTCTGTTCCTCGCAGGCAGCTGGTTGTGGTCGCCGCCAAGAAATCTTGGCTTCCTGGTGTTCGAGGTGGTGGCAACTTGGTCGACCCAGAATGGCTCGATGGCTCGCTACCAGGAGACTACGGTTTCGACCCACTTGGATTAGGGAAGGACCCGGCATTTCTAAGATGGTACAGAGAGGCAGAGCTAATCCACGGACGATGGGCAATGGCCGCCGTCATCGGAATCTTGATCGGCCAAGCTTATAGCGGCATCCCCTGGTTCGAGGCCGGAGCTGCCCCTGGCGCAGTGTCGCCCTTCTCCTTCGGCACCCTGCTCGGCACCCAACTCCTGCTAATGGGGTGGGTCGAGAACAAGAGATGGGTAGATTTCTTCAACCCGGACTCGCAGTCGGTGGAGTGGGCGACGCCATGGTCGAGAACAGCCGAAAATTTCTCCAATGCCACCGGTGAGCAGGGGTACCCCGGCGGAAAATTCTTCGACCCGCTAGGCGTGGCCGGAACCATTAACGATGGGGTTTACATTCCGGACGTGGAGAAGCTGGAGAGACTGAAGTTGGCGGAGATAAAGCATGCGAGAATCGCCATGTTAGCGATGCTTATTTTCTACTTTGAAGCTGGACAGGGGAAGACTCCCCTCGGTGCCATTGGATTGTGA 765 57.12 MAATSGSVLNGLSSPFLCGGNRSQALLAGPARVAVSASVPRRQLVVVAAKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLRWYREAELIHGRWAMAAVIGILIGQAYSGIPWFEAGAAPGAVSPFSFGTLLGTQLLLMGWVENKRWVDFFNPDSQSVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGVAGTINDGVYIPDVEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAIGL 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8244902 8245977 + Bma007357.1 Bma12g00392 91818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00392 254 Pfam Chlorophyll A-B binding protein 66 242 IPR022796 -
Bma12g00392 254 Gene3D Chlorophyll a/b binding protein domain 66 252 - -
Bma12g00392 254 SUPERFAMILY Chlorophyll a-b binding protein 63 253 - -
Bma12g00392 254 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 254 IPR001344 GO:0009765|GO:0016020
Bma12g00392 254 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00392 Bma-Chr12:8244902 Bma10g00275 Bma-Chr10:2490354 5.90E-35 dispersed
Bma12g00374 Bma-Chr12:7192871 Bma12g00392 Bma-Chr12:8244902 0 transposed
Bma12g00392 Bma-Chr12:8244902 Bma05g00575 Bma-Chr5:33408283 3.76E-155 wgd
Bma12g00392 Bma-Chr12:8244902 Bma05g00575 Bma-Chr5:33408283 3.76E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00392 K08917 - jre:109007089 443.351