Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00393 GGAATGACAAACTCGAATTACCTGGAGCTGAATGAGCTACACGAGAAATACAAAGATCAAGGCTTGGAGATTCTGGCATTTCCTTGTAATCAATTCGGGGAGGAGAAACCAGGAAGTAACGATGAGATTACAGAGTTTGTTTGCACTCGGTTTAAATCAGAATTCCCCATCTTTGATAAGATTGAAGTGAATGGCCTGGATACTGCTCCACTCTACAAGTTCTTGAAATTAGGCAAATGGGGAATATTAGGCGATGATATACAGTGGAACTTTGCTAAATTTCTCGTTAACAAAGACGGACAAGTGGTCGATCGCCACTACCCGACGACATCCCCCCTCAGCAACGAGGTAAACTCTTACCCAAGTCTTAATTTTTTGTTCAACAAGATTTTCAGACCCAGTTCGTTCAGGTAA 414 42.03 GMTNSNYLELNELHEKYKDQGLEILAFPCNQFGEEKPGSNDEITEFVCTRFKSEFPIFDKIEVNGLDTAPLYKFLKLGKWGILGDDIQWNFAKFLVNKDGQVVDRHYPTTSPLSNEVNSYPSLNFLFNKIFRPSSFR 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8270955 8271564 + Bma007358.1 Bma12g00393 91819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00393 137 Pfam Glutathione peroxidase 1 76 IPR000889 GO:0004602|GO:0006979
Bma12g00393 137 PIRSF Glutathion_perox 1 125 IPR000889 GO:0004602|GO:0006979
Bma12g00393 137 Gene3D Glutaredoxin 1 120 - -
Bma12g00393 137 PANTHER GLUTATHIONE PEROXIDASE 1 117 IPR000889 GO:0004602|GO:0006979
Bma12g00393 137 PRINTS Glutathione peroxidase family signature 22 38 IPR000889 GO:0004602|GO:0006979
Bma12g00393 137 PRINTS Glutathione peroxidase family signature 87 96 IPR000889 GO:0004602|GO:0006979
Bma12g00393 137 CDD GSH_Peroxidase 3 114 IPR000889 GO:0004602|GO:0006979
Bma12g00393 137 ProSitePatterns Glutathione peroxidases signature 2. 25 32 IPR029760 -
Bma12g00393 137 ProSiteProfiles Glutathione peroxidase profile. 1 133 IPR000889 GO:0004602|GO:0006979
Bma12g00393 137 PANTHER GLUTATHIONE PEROXIDASE 8-RELATED 1 117 - -
Bma12g00393 137 SUPERFAMILY Thioredoxin-like 2 114 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00393 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - pop:7472772 219.935
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01647 Bma12g00393 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00376 Bma-Chr12:7220534 Bma12g00393 Bma-Chr12:8270955 2.45E-85 dispersed
Bma12g00393 Bma-Chr12:8270955 Bma12g00085 Bma-Chr12:1555650 4.80E-44 dispersed
Bma12g00393 Bma-Chr12:8270955 Bma14g00593 Bma-Chr14:6432297 1.94E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g330 . . . . . . Bma07g01647 . . . Cma02g01460 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0773 Cone9ag0779 . Csa05g00289 Chy09g01217 . . Blo19g00321 . Bda09g00042 . . . Bma12g00393 . Cmo02g01495 . . . . . . . Bhi12g00245 . . . . . . . . . . . . . Lsi09g00266 . . Cme09g01754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00393 Bma_Chr12 FPKM 0.615532 1.549269 1.23138 1.336352 0.0 0.0 0.0 0.0 0.0 0.0